C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000EM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182831-ENSG00000183454 CGP 9606 16:9091648-10182754
GeneTranscriptPositionBiotype
ENSG00000182831 (C16orf72)
chromosome 16 open reading frame 72 		ENST00000327827 (C16orf72-001) 9091648-9121640 protein_coding
ENST00000574285 (C16orf72-002) 9092191-9113181 protein_coding
ENSG00000183454 (GRIN2A)
glutamate receptor, ionotropic, N-methyl D-aspartate 2A 		ENST00000330684 (GRIN2A-002) 9763061-10182406 protein_coding
ENST00000396573 (GRIN2A-001) 9758519-10182754 protein_coding
ENST00000396575 (GRIN2A-201) 9753409-9938554 protein_coding
ENST00000461292 (GRIN2A-004) 9763175-9763806 processed_transcript
ENST00000463531 (GRIN2A-003) 9764839-9769228 processed_transcript
ENST00000535259 (GRIN2A-202) 9762676-9938558 protein_coding
ENST00000562109 (GRIN2A-006) 9762675-10180432 protein_coding
ENST00000566665 (GRIN2A-005) 10179491-10182259 retained_intron
ENST00000566670 (GRIN2A-009) 9938154-10031580 processed_transcript
ENST00000566683 (GRIN2A-007) 9849887-10031564 processed_transcript
ENST00000568247 (GRIN2A-008) 9938067-9970795 processed_transcript
ENSG00000220793 (RPL21P119)
ribosomal protein L21 pseudogene 119 		ENST00000484462 (RPL21P119-001) 9156402-9156881 processed_pseudogene
ENSG00000252927 (RNA5SP404)
RNA, 5S ribosomal pseudogene 404 		ENST00000517118 (RNA5SP404-201) 9600097-9600228 rRNA
ENSG00000260071 (RP11-418I22.2)
 ENST00000570038 (RP11-418I22.2-001) 9466655-9517564 lincRNA
ENSG00000260349 (RP11-473I1.5)
 ENST00000565648 (RP11-473I1.5-001) 9105834-9107174 antisense
ENSG00000260362 (RP11-297M9.1)
 ENST00000561538 (RP11-297M9.1-001) 9666885-9676843 lincRNA
ENSG00000260432 (RP11-297M9.2)
 ENST00000562861 (RP11-297M9.2-001) 9753404-9758038 lincRNA
ENSG00000261075 (LINC01195)
long intergenic non-protein coding RNA 1195 		ENST00000570118 (LINC01195-001) 9446010-9455505 lincRNA
ENSG00000261397 (LINC01177)
long intergenic non-protein coding RNA 1177 		ENST00000568030 (LINC01177-001) 9441294-9444985 lincRNA
ENSG00000261617 (RP11-243A14.1)
 ENST00000564305 (RP11-243A14.1-001) 9355588-9408093 lincRNA
ENSG00000261647 (IMPDH1P11)
IMP (inosine monophosphate) dehydrogenase 1 pseudogene 11 		ENST00000567885 (IMPDH1P11-001) 10111382-10112885 processed_pseudogene
ENSG00000261810 (RP11-895K13.2)
 ENST00000569218 (RP11-895K13.2-001) 10033684-10037297 antisense
ENSG00000263244 (RP11-473I1.9)
 ENST00000574616 (RP11-473I1.9-001) 9104848-9113181 3prime_overlapping_ncrna

Homo sapiens Ensembl (GRCh38)

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CIL_0000EM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022507-ENSMUSG00000059003 CGP 10090 16:8830100-9994921
GeneTranscriptPositionBiotype
ENSMUSG00000022507 (1810013L24Rik)
RIKEN cDNA 1810013L24 gene 		ENSMUST00000023150 (1810013L24Rik-201) 8830100-8858916 protein_coding
ENSMUSG00000059003 (Grin2a)
glutamate receptor, ionotropic, NMDA2A (epsilon 1) 		ENSMUST00000032331 (Grin2a-201) 9577827-9992533 protein_coding
ENSMUST00000115835 (Grin2a-001) 9577710-9994921 protein_coding
ENSMUST00000156482 (Grin2a-002) 9991655-9994260 retained_intron
ENSMUSG00000068674 (Gm10247)
predicted gene 10247 		ENSMUST00000090395 (Gm10247-201) 8922057-8922389 processed_pseudogene
ENSMUSG00000087982 (Gm22224)
predicted gene, 22224 		ENSMUST00000157357 (Gm22224-201) 8873079-8873171 rRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000EM_0001ENSG00000182831ENST00000327827ENST00000574285ENSG00000183454ENST00000330684ENST00000396573ENST00000396575ENST00000461292ENST00000463531ENST00000535259ENST00000562109ENST00000566665ENST00000566670ENST00000566683ENST00000568247ENSG00000220793ENST00000484462ENSG00000252927ENST00000517118ENSG00000260071ENST00000570038ENSG00000260349ENST00000565648ENSG00000260362ENST00000561538ENSG00000260432ENST00000562861ENSG00000261075ENST00000570118ENSG00000261397ENST00000568030ENSG00000261617ENST00000564305ENSG00000261647ENST00000567885ENSG00000261810ENST00000569218ENSG00000263244ENST00000574616CIL_0000EM_0002ENSMUSG00000022507ENSMUST00000023150ENSMUSG00000059003ENSMUST00000032331ENSMUST00000115835ENSMUST00000156482ENSMUSG00000068674ENSMUST00000090395ENSMUSG00000087982ENSMUST00000157357
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000EM_0001ENSG00000182831ENST00000327827ENST00000574285ENSG00000183454ENST00000330684ENST00000396573ENST00000396575ENST00000463531ENST00000535259ENST00000566665ENST00000568247ENSG00000220793ENST00000484462ENSG00000252927ENST00000517118ENSG00000260071ENST00000570038ENSG00000260349ENST00000565648ENSG00000260362ENST00000561538ENSG00000260432ENST00000562861ENSG00000261075ENST00000570118ENSG00000261397ENST00000568030ENSG00000261617ENST00000564305ENSG00000261647ENST00000567885ENSG00000261810ENST00000569218ENSG00000263244ENST00000574616CIL_0000EM_0002ENSMUSG00000022507ENSMUST00000023150ENSMUSG00000059003ENSMUST00000032331ENSMUST00000115835ENSMUST00000156482ENSMUSG00000068674ENSMUST00000090395ENSMUSG00000087982ENSMUST00000157357
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000182831 ENST00000327827 6.358±0.00 4.430±0.00 2.285±0.00 4.716±0.81 6.513±0.93 5.871±0.99 4.384±1.72 4.750±2.40 4.394±0.87 6.249±1.74 5.489±1.72 4.854±1.15 5.179±0.75 10.292±1.42
ENST00000574285 5.610±0.00 8.718±0.00 4.091±0.00 9.571±0.93 6.704±1.26 3.614±2.17 4.648±1.10 3.353±0.45 4.816±1.60 3.632±0.56 3.441±0.23 3.458±2.15 2.220±1.22 4.880±0.68
ENSG00000183454 ENST00000330684 N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.00
ENST00000396573 0.003±0.00 N/A N/A N/A 0.036±0.02 0.212±0.00 0.385±0.22 N/A 0.069±0.06 N/A N/A 0.049±0.00 N/A 0.187±0.00
ENST00000396575 N/A N/A N/A 6.992±1.14 N/A N/A N/A 0.027±0.00 N/A N/A N/A 0.069±0.06 N/A 0.055±0.00
ENST00000461292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.293±0.00 N/A N/A N/A
ENST00000535259 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A N/A N/A 1.254±0.00
ENST00000562109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566665 N/A N/A N/A N/A 0.373±0.00 N/A N/A N/A N/A N/A 0.087±0.00 N/A N/A N/A
ENST00000566670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A
ENSG00000220793 ENST00000484462 0.135±0.00 0.056±0.00 N/A 0.028±0.00 0.054±0.00 0.051±0.00 0.026±0.00 0.028±0.00 N/A 0.074±0.00 0.025±0.00 0.087±0.00 0.082±0.03 0.088±0.00
ENSG00000252927 ENST00000517118 N/A N/A N/A 9.847±0.00 N/A N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A
ENSG00000260071 ENST00000570038 N/A N/A N/A 0.040±0.00 N/A 0.137±0.00 0.085±0.00 N/A N/A 0.082±0.00 N/A N/A N/A 0.290±0.24
ENSG00000260349 ENST00000565648 N/A N/A 7.315±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260362 ENST00000561538 N/A 0.026±0.00 0.410±0.00 0.188±0.08 N/A 0.025±0.00 N/A 0.065±0.00 0.114±0.00 0.147±0.00 N/A 0.063±0.00 N/A N/A
ENSG00000260432 ENST00000562861 N/A N/A N/A 4.949±0.00 N/A 0.088±0.00 N/A 0.011±0.00 0.009±0.00 N/A N/A N/A 0.007±0.00 N/A
ENSG00000261075 ENST00000570118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.151±0.02
ENSG00000261397 ENST00000568030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.03
ENSG00000261617 ENST00000564305 0.041±0.00 0.086±0.00 N/A 0.342±0.22 0.024±0.00 0.084±0.06 0.120±0.01 0.118±0.06 0.011±0.00 0.012±0.00 0.022±0.01 0.024±0.02 0.005±0.00 0.258±0.14
ENSG00000261647 ENST00000567885 N/A N/A 0.038±0.00 0.051±0.01 0.228±0.00 N/A N/A N/A 0.039±0.00 N/A N/A 0.105±0.00 N/A 0.029±0.00
ENSG00000261810 ENST00000569218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.24
ENSG00000263244 ENST00000574616 N/A N/A N/A N/A N/A 1.042±0.00 N/A 1.758±0.00 1.280±0.00 1.327±0.00 1.335±0.00 2.574±0.00 N/A 1.567±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022507 ENSMUST00000023150 7.984±0.37 17.692±2.92 10.357±0.54 7.166±1.31 10.667±3.80 15.079±1.13 6.875±2.49 9.803±1.27 6.833±2.72 14.494±2.18 7.660±0.65 10.236±2.69 15.390±2.35 22.259±4.71
ENSMUSG00000059003 ENSMUST00000032331 0.008±0.00 0.024±0.01 0.013±0.00 N/A N/A 0.012±0.00 0.014±0.01 0.013±0.00 0.011±0.01 0.019±0.01 0.010±0.00 0.074±0.07 0.007±0.00 0.104±0.03
ENSMUST00000115835 N/A 0.036±0.02 0.020±0.00 0.905±0.80 N/A N/A N/A N/A 0.003±0.00 N/A N/A 0.017±0.00 0.005±0.00 0.031±0.00
ENSMUST00000156482 N/A 0.298±0.16 N/A N/A N/A N/A N/A N/A 0.015±0.00 0.024±0.00 N/A 0.064±0.02 N/A N/A
ENSMUSG00000068674 ENSMUST00000090395 0.274±0.03 N/A 1.229±0.92 0.522±0.47 N/A N/A N/A 0.433±0.00 1.424±1.48 N/A 0.193±0.03 0.283±0.00 0.716±0.79 N/A
ENSMUSG00000087982 ENSMUST00000157357 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4652.590±0.00 N/A N/A N/A N/A

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