C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000008243-ENSDARG00000069143 CGP 7955 10:25963452-26002744
GeneTranscriptPositionBiotype
ENSDARG00000008243 (cct8)
chaperonin containing TCP1, subunit 8 (theta) 		ENSDART00000009477 (cct8-001) 25963452-25979373 protein_coding
ENSDART00000132021 (cct8-005) 25964473-25970229 retained_intron
ENSDART00000137196 (cct8-004) 25963453-25964323 retained_intron
ENSDART00000137619 (cct8-002) 25970342-25979365 processed_transcript
ENSDART00000140201 (cct8-003) 25963452-25968113 processed_transcript
ENSDARG00000069143 (map3k7cl)
map3k7 C-terminal like 		ENSDART00000100415 (map3k7cl-201) 25989039-26002523 protein_coding
ENSDART00000144082 (map3k7cl-001) 25991445-26002744 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000MN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156261-ENSG00000156265 CGP 9606 21:29055805-29175889
GeneTranscriptPositionBiotype
ENSG00000156261 (CCT8)
chaperonin containing TCP1, subunit 8 (theta) 		ENST00000286788 (CCT8-003) 29056324-29073797 protein_coding
ENST00000431234 (CCT8-006) 29062209-29073565 protein_coding
ENST00000432178 (CCT8-001) 29055805-29061376 protein_coding
ENST00000470450 (CCT8-004) 29056324-29073639 processed_transcript
ENST00000475205 (CCT8-011) 29062169-29063468 retained_intron
ENST00000480359 (CCT8-010) 29062128-29062737 processed_transcript
ENST00000481059 (CCT8-007) 29065076-29072236 processed_transcript
ENST00000484403 (CCT8-008) 29065060-29073615 retained_intron
ENST00000494296 (CCT8-009) 29067590-29073432 processed_transcript
ENST00000496121 (CCT8-005) 29056324-29062867 retained_intron
ENST00000540844 (CCT8-201) 29056322-29073797 protein_coding
ENSG00000156265 (MAP3K7CL)
MAP3K7 C-terminal like 		ENST00000286791 (MAP3K7CL-201) 29085861-29175888 protein_coding
ENST00000339024 (MAP3K7CL-005) 29092254-29175889 protein_coding
ENST00000341618 (MAP3K7CL-002) 29077633-29175889 protein_coding
ENST00000399925 (MAP3K7CL-011) 29130961-29175026 protein_coding
ENST00000399926 (MAP3K7CL-010) 29130638-29175014 protein_coding
ENST00000399928 (MAP3K7CL-006) 29130485-29175889 protein_coding
ENST00000399934 (MAP3K7CL-004) 29077633-29175889 protein_coding
ENST00000399935 (MAP3K7CL-003) 29077633-29175889 protein_coding
ENST00000399947 (MAP3K7CL-001) 29080552-29175889 protein_coding
ENST00000419845 (MAP3K7CL-008) 29077475-29091576 protein_coding
ENST00000451489 (MAP3K7CL-012) 29131257-29174745 protein_coding
ENST00000460883 (MAP3K7CL-009) 29122055-29175029 processed_transcript
ENST00000470800 (MAP3K7CL-013) 29145559-29175219 processed_transcript
ENST00000492930 (MAP3K7CL-007) 29077496-29102640 processed_transcript
ENST00000496779 (MAP3K7CL-014) 29077471-29109791 processed_transcript
ENST00000545939 (MAP3K7CL-202) 29109132-29175888 protein_coding
ENSG00000231125 (AF129075.5)
 ENST00000457162 (AF129075.5-001) 29058073-29060095 sense_intronic
ENSG00000232687 (RPL12P9)
ribosomal protein L12 pseudogene 9 		ENST00000412942 (RPL12P9-001) 29127701-29128188 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000MN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025613-ENSMUSG00000025610 CGP 10090 16:87483326-87595336
GeneTranscriptPositionBiotype
ENSMUSG00000025610 (Map3k7cl)
Map3k7 C-terminal like 		ENSMUST00000026700 (Map3k7cl-001) 87553330-87595336 protein_coding
ENSMUSG00000025613 (Cct8)
chaperonin containing Tcp1, subunit 8 (theta) 		ENSMUST00000026704 (Cct8-001) 87483326-87495873 protein_coding
ENSMUST00000175750 (Cct8-005) 87484911-87488843 protein_coding
ENSMUST00000175977 (Cct8-003) 87483988-87495788 protein_coding
ENSMUST00000176041 (Cct8-007) 87488931-87495859 protein_coding
ENSMUST00000176241 (Cct8-010) 87485579-87486355 retained_intron
ENSMUST00000176589 (Cct8-009) 87485727-87486497 retained_intron
ENSMUST00000176750 (Cct8-008) 87490488-87495704 protein_coding
ENSMUST00000177301 (Cct8-006) 87488845-87491448 processed_transcript
ENSMUST00000177376 (Cct8-002) 87483988-87495788 nonsense_mediated_decay
ENSMUST00000177485 (Cct8-004) 87485439-87486070 retained_intron
ENSMUSG00000025616 (Usp16)
ubiquitin specific peptidase 16 		ENSMUST00000026710 (Usp16-001) 87454703-87483517 protein_coding
ENSMUST00000119504 (Usp16-006) 87454979-87483310 protein_coding
ENSMUST00000131206 (Usp16-003) 87455043-87471024 retained_intron
ENSMUST00000131356 (Usp16-008) 87454985-87462049 protein_coding
ENSMUST00000135399 (Usp16-007) 87472854-87479913 retained_intron
ENSMUST00000144759 (Usp16-004) 87455058-87483310 nonsense_mediated_decay
ENSMUST00000144886 (Usp16-002) 87455027-87461566 retained_intron
ENSMUST00000146386 (Usp16-005) 87473089-87479207 retained_intron
ENSMUST00000149656 (Usp16-009) 87481438-87483180 retained_intron
ENSMUST00000177275 (Usp16-012) 87482851-87483298 retained_intron
ENSMUST00000177538 (Usp16-011) 87455049-87466346 processed_transcript
ENSMUSG00000090753 (Rpl31-ps4)
ribosomal protein L31, pseudogene 4 		ENSMUST00000079114 (Rpl31-ps4-001) 87549062-87549451 processed_pseudogene
ENSMUSG00000093606 (B130034C11Rik)
RIKEN cDNA B130034C11 gene 		ENSMUST00000175717 (B130034C11Rik-001) 87496073-87504033 processed_transcript
ENSMUST00000176296 (B130034C11Rik-002) 87495999-87503828 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MN_0001ENSDARG00000008243ENSDART00000009477ENSDART00000132021ENSDART00000137196ENSDART00000137619ENSDART00000140201ENSDARG00000069143ENSDART00000100415ENSDART00000144082CIL_0000MN_0002ENSG00000156261ENST00000286788ENST00000431234ENST00000432178ENST00000470450ENST00000475205ENST00000480359ENST00000481059ENST00000484403ENST00000494296ENST00000496121ENST00000540844ENSG00000156265ENST00000286791ENST00000339024ENST00000341618ENST00000399925ENST00000399926ENST00000399928ENST00000399934ENST00000399935ENST00000399947ENST00000419845ENST00000451489ENST00000460883ENST00000470800ENST00000492930ENST00000496779ENST00000545939ENSG00000231125ENST00000457162ENSG00000232687ENST00000412942CIL_0000MN_0003ENSMUSG00000025610ENSMUST00000026700ENSMUSG00000025613ENSMUST00000026704ENSMUST00000175750ENSMUST00000175977ENSMUST00000176041ENSMUST00000176241ENSMUST00000176589ENSMUST00000176750ENSMUST00000177301ENSMUST00000177376ENSMUST00000177485ENSMUSG00000025616ENSMUST00000026710ENSMUST00000119504ENSMUST00000131206ENSMUST00000131356ENSMUST00000135399ENSMUST00000144759ENSMUST00000144886ENSMUST00000146386ENSMUST00000149656ENSMUST00000177275ENSMUST00000177538ENSMUSG00000090753ENSMUST00000079114ENSMUSG00000093606ENSMUST00000175717ENSMUST00000176296
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MN_0001ENSDARG00000008243ENSDART00000009477ENSDART00000137196ENSDART00000140201ENSDARG00000069143ENSDART00000100415ENSDART00000144082CIL_0000MN_0002ENSG00000156261ENST00000286788ENST00000470450ENST00000496121ENST00000540844ENSG00000156265ENST00000286791ENST00000339024ENST00000341618ENST00000399925ENST00000399926ENST00000399928ENST00000399935ENST00000399947ENST00000419845ENST00000451489ENST00000460883ENST00000470800ENST00000492930ENST00000496779ENST00000545939ENSG00000231125ENST00000457162ENSG00000232687ENST00000412942CIL_0000MN_0003ENSMUSG00000025610ENSMUST00000026700ENSMUSG00000025613ENSMUST00000026704ENSMUST00000175977ENSMUST00000177376ENSMUSG00000025616ENSMUST00000026710ENSMUST00000119504ENSMUST00000131206ENSMUST00000144759ENSMUST00000146386ENSMUSG00000090753ENSMUST00000079114ENSMUSG00000093606ENSMUST00000175717ENSMUST00000176296
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008243 ENSDART00000009477 N/A N/A N/A 32.703±29.66 N/A N/A 44.983±31.47 95.171±0.00 56.777±0.00 N/A 22.677±0.00 N/A N/A N/A
ENSDART00000132021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137196 N/A N/A N/A 32.611±2.62 N/A N/A 0.464±0.00 2.456±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000137619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140201 N/A N/A N/A N/A N/A N/A 73.863±13.47 N/A N/A N/A 21.281±0.00 N/A N/A N/A
ENSDARG00000069143 ENSDART00000100415 N/A N/A N/A N/A N/A N/A 0.316±0.04 7.264±0.00 0.326±0.00 N/A 0.320±0.00 N/A N/A N/A
ENSDART00000144082 N/A N/A N/A 2.326±0.06 N/A N/A 0.097±0.00 0.224±0.00 N/A N/A 0.250±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156261 ENST00000286788 22.973±0.00 26.091±0.00 8.910±0.00 19.748±2.87 17.116±6.27 25.527±7.26 8.611±0.00 13.898±0.00 19.219±0.00 12.482±4.99 13.090±2.88 53.751±10.92 41.958±4.20 23.774±8.30
ENST00000431234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470450 N/A N/A N/A 3.096±0.00 N/A 11.924±0.00 9.861±0.00 24.992±0.00 13.233±0.00 19.300±0.00 13.211±0.00 N/A N/A 30.836±0.00
ENST00000475205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496121 N/A N/A 2.556±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540844 21.146±0.00 25.380±0.00 N/A 26.734±0.00 24.961±0.00 17.547±0.00 6.617±0.00 28.551±0.00 12.746±0.00 16.662±0.00 12.191±0.00 68.539±0.00 40.253±0.00 44.949±6.10
ENSG00000156265 ENST00000286791 0.416±0.00 N/A N/A 0.289±0.00 N/A N/A N/A N/A N/A 0.364±0.00 N/A 0.337±0.00 N/A N/A
ENST00000339024 N/A 0.644±0.00 N/A N/A N/A N/A N/A 0.333±0.00 0.381±0.07 N/A N/A 0.514±0.00 N/A 0.530±0.00
ENST00000341618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.293±0.00 N/A
ENST00000399925 N/A N/A N/A N/A 0.578±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.113±0.00
ENST00000399926 N/A N/A 0.473±0.00 N/A N/A N/A N/A N/A 0.615±0.00 7.438±0.00 8.239±0.00 1.728±0.00 0.393±0.00 1.238±0.00
ENST00000399928 0.269±0.00 1.692±0.00 N/A 0.170±0.00 0.455±0.00 0.711±0.00 0.308±0.00 0.412±0.23 0.196±0.00 0.897±0.51 N/A 0.595±0.08 N/A 0.877±0.00
ENST00000399934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399935 N/A N/A 0.084±0.00 N/A N/A 0.749±0.00 N/A N/A N/A N/A N/A 0.233±0.00 N/A N/A
ENST00000399947 N/A 0.525±0.00 N/A N/A 0.226±0.00 N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A N/A
ENST00000419845 N/A N/A 0.209±0.00 N/A N/A 0.460±0.00 N/A 0.833±0.00 N/A N/A N/A N/A N/A N/A
ENST00000451489 N/A N/A N/A N/A N/A 0.325±0.00 N/A N/A N/A N/A 0.743±0.00 N/A N/A N/A
ENST00000460883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.583±0.00 N/A 1.245±0.00
ENST00000470800 N/A N/A N/A 0.124±0.00 1.020±0.00 N/A 0.271±0.00 N/A 0.417±0.00 N/A N/A 1.926±0.00 0.514±0.00 N/A
ENST00000492930 N/A N/A N/A 0.826±0.00 0.611±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496779 N/A N/A N/A N/A N/A 0.082±0.00 0.063±0.00 N/A 0.177±0.00 N/A N/A 0.513±0.00 N/A N/A
ENST00000545939 0.638±0.00 N/A N/A 0.132±0.00 0.990±0.00 0.428±0.00 0.429±0.23 0.684±0.00 N/A 2.048±1.13 7.455±0.00 N/A 0.674±0.34 0.447±0.00
ENSG00000231125 ENST00000457162 0.252±0.00 0.696±0.00 0.069±0.00 0.452±0.06 1.078±0.87 0.390±0.26 0.412±0.03 0.154±0.09 0.206±0.08 0.274±0.02 0.009±0.00 0.690±0.58 0.147±0.07 0.513±0.44
ENSG00000232687 ENST00000412942 0.028±0.00 N/A 1.250±0.00 N/A N/A N/A N/A 0.100±0.00 N/A 1.149±0.00 N/A 0.128±0.01 N/A 0.060±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025610 ENSMUST00000026700 2.530±0.34 0.931±0.13 1.266±0.07 0.134±0.05 1.018±0.37 0.469±0.26 0.758±0.15 22.292±3.10 0.139±0.10 1.430±0.29 4.911±1.41 4.352±1.94 0.379±0.30 0.949±0.10
ENSMUSG00000025613 ENSMUST00000026704 24.031±7.64 22.778±11.60 40.124±2.03 46.284±19.98 15.460±4.78 15.994±2.94 15.404±3.01 21.792±7.06 43.257±26.02 16.489±5.22 20.119±1.18 20.240±8.61 56.071±24.76 30.559±6.00
ENSMUST00000175750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175977 N/A N/A N/A 40.121±0.00 N/A N/A N/A N/A N/A N/A N/A 44.962±0.00 45.930±30.47 51.022±0.00
ENSMUST00000176041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177376 N/A N/A 32.029±1.94 29.753±4.41 13.139±6.83 N/A 10.041±3.17 N/A 58.164±17.92 N/A 24.278±2.93 53.376±1.86 66.860±32.05 43.365±0.00
ENSMUST00000177485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025616 ENSMUST00000026710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.773±0.87 13.557±0.16 7.454±0.00 N/A
ENSMUST00000119504 N/A N/A N/A N/A N/A 3.116±0.25 N/A N/A N/A N/A N/A N/A 10.605±0.00 17.683±10.67
ENSMUST00000131206 N/A N/A N/A 24.590±0.00 N/A N/A N/A N/A N/A N/A N/A 38.215±0.00 23.701±0.00 78.050±0.00
ENSMUST00000131356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144759 4.581±0.29 N/A N/A N/A 5.496±1.56 N/A N/A N/A N/A 5.361±0.87 4.983±0.00 N/A N/A 12.816±2.22
ENSMUST00000144886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 138.720±0.00
ENSMUST00000149656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090753 ENSMUST00000079114 N/A N/A 14.391±0.00 1.438±0.00 N/A N/A N/A N/A 6.241±1.01 N/A N/A N/A 0.130±0.05 0.912±0.28
ENSMUSG00000093606 ENSMUST00000175717 0.085±0.00 0.121±0.06 0.307±0.07 0.689±0.00 0.254±0.12 0.489±0.23 0.163±0.00 0.546±0.27 0.405±0.23 0.087±0.00 0.198±0.03 0.522±0.30 0.122±0.06 0.121±0.02
ENSMUST00000176296 0.148±0.02 0.113±0.02 0.239±0.00 0.497±0.34 0.323±0.21 0.202±0.14 N/A 0.128±0.05 0.328±0.23 0.193±0.09 0.160±0.00 0.279±0.15 0.108±0.05 0.128±0.05

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