C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L29 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486611 RPL29P3-001 ENSG00000243730 9606 - 14:36577543-36578005 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLungMuscleENST00000486611
Transcript ID Adipose Brain Breast Colon Kidney Lung Muscle
ENST00000486611 0.039±0.00 0.045±0.00 0.044±0.00 0.040±0.00 0.084±0.00 0.122±0.00 0.109±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092P CIL_00092P_0001 VISTA 14:36045096-36646731
CIL_0008XR CIL_0008XR_0001 VISTA 14:36124115-36725121
CIL_0008R1 CIL_0008R1_0001 VISTA 14:36138356-36739990
CIL_00091S CIL_00091S_0001 VISTA 14:36141957-36745155
CIL_0007TC CIL_0007TC_0001 VISTA 14:36163945-36765327
CIL_0007XY CIL_0007XY_0001 VISTA 14:36204570-36805380
CIL_0007LS CIL_0007LS_0002 UCNEbase 14:36362793-37516218
CIL_0000SP CIL_0000SP_0001 CGP 14:36516392-36582607

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 296
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 296
ENSMUST00000118562 Gm12987-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 279
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000119789 Gm12704-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 274
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 272
ENSMUST00000086508 Rpl29-ps2-201 processed_pseudogene Mus_musculus 0 268
ENSMUST00000120287 Gm11533-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 259
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 257
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 252
ENSMUST00000119801 Gm11955-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000119175 Gm11449-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000119668 Gm13213-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 248
ENSMUST00000112504 Gm15526-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000075152 Gm4945-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000116110 Gm11799-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000122403 Gm15212-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000119044 Gm13545-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000117250 Gm12193-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000188361 RP23-299M19.2-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000161849 Rpl29-ps1-001 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000118333 Gm12937-001 processed_pseudogene Mus_musculus 1e-29 134
ENSMUST00000119890 Gm8832-001 processed_pseudogene Mus_musculus 1e-28 130
ENSMUST00000118520 Gm11926-001 processed_pseudogene Mus_musculus 0.00000000000004 82

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