C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000XS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101003-ENSG00000101004 CGP 9606 20:25407727-25585517
GeneTranscriptPositionBiotype
ENSG00000101003 (GINS1)
GINS complex subunit 1 (Psf1 homolog) 		ENST00000262460 (GINS1-001) 25407727-25448555 protein_coding
ENST00000473460 (GINS1-004) 25413457-25417246 processed_transcript
ENST00000481735 (GINS1-002) 25443024-25452628 processed_transcript
ENST00000484893 (GINS1-003) 25407731-25418195 processed_transcript
ENSG00000101004 (NINL)
ninein-like 		ENST00000278886 (NINL-007) 25452705-25585517 protein_coding
ENST00000336104 (NINL-003) 25462383-25479027 protein_coding
ENST00000422516 (NINL-201) 25452826-25585517 protein_coding
ENST00000461642 (NINL-006) 25488983-25496803 processed_transcript
ENST00000464285 (NINL-002) 25452837-25458976 processed_transcript
ENST00000489780 (NINL-004) 25481838-25491525 processed_transcript
ENST00000496509 (NINL-005) 25455673-25462742 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0000XS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027454-ENSMUSG00000068115 CGP 10090 2:150905400-151039382
GeneTranscriptPositionBiotype
ENSMUSG00000027454 (Gins1)
GINS complex subunit 1 (Psf1 homolog) 		ENSMUST00000028948 (Gins1-001) 150909594-150931280 protein_coding
ENSMUST00000123217 (Gins1-004) 150912819-150927545 processed_transcript
ENSMUST00000140950 (Gins1-002) 150909617-150926097 processed_transcript
ENSMUST00000152991 (Gins1-003) 150905400-150925903 processed_transcript
ENSMUSG00000053916 (Nanp)
N-acetylneuraminic acid phosphatase 		ENSMUST00000066640 (Nanp-001) 151029685-151039398 protein_coding
ENSMUST00000140124 (Nanp-002) 151030757-151039362 processed_transcript
ENSMUSG00000068115 (Ninl)
ninein-like 		ENSMUST00000109896 (Ninl-001) 150934519-151009398 protein_coding
ENSMUST00000124135 (Ninl-009) 150937554-150952792 protein_coding
ENSMUST00000128564 (Ninl-003) 150963462-151009332 processed_transcript
ENSMUST00000128627 (Ninl-004) 150974123-151039382 protein_coding
ENSMUST00000147293 (Ninl-007) 150952491-150953924 retained_intron
ENSMUST00000149268 (Ninl-005) 150963370-150971214 processed_transcript
ENSMUST00000149979 (Ninl-002) 150966183-151009376 processed_transcript
ENSMUST00000150036 (Ninl-008) 150937040-150940909 processed_transcript
ENSMUST00000150595 (Ninl-006) 150958559-150971080 protein_coding
ENSMUSG00000082341 (Gm14143)
predicted gene 14143 		ENSMUST00000121686 (Gm14143-001) 150933533-150933889 processed_pseudogene
ENSMUSG00000082375 (Gm14141)
predicted gene 14141 		ENSMUST00000120236 (Gm14141-001) 150992182-150992964 processed_pseudogene
ENSMUSG00000084264 (Gm14142)
predicted gene 14142 		ENSMUST00000117833 (Gm14142-001) 150946327-150946809 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XS_0001ENSG00000101003ENST00000262460ENST00000473460ENST00000481735ENST00000484893ENSG00000101004ENST00000278886ENST00000336104ENST00000422516ENST00000461642ENST00000464285ENST00000489780ENST00000496509CIL_0000XS_0002ENSMUSG00000027454ENSMUST00000028948ENSMUST00000123217ENSMUST00000140950ENSMUST00000152991ENSMUSG00000053916ENSMUST00000066640ENSMUST00000140124ENSMUSG00000068115ENSMUST00000109896ENSMUST00000124135ENSMUST00000128564ENSMUST00000128627ENSMUST00000147293ENSMUST00000149268ENSMUST00000149979ENSMUST00000150036ENSMUST00000150595ENSMUSG00000082341ENSMUST00000121686ENSMUSG00000082375ENSMUST00000120236ENSMUSG00000084264ENSMUST00000117833
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XS_0001ENSG00000101003ENST00000262460ENST00000473460ENST00000481735ENSG00000101004ENST00000278886ENST00000336104ENST00000422516ENST00000464285ENST00000489780CIL_0000XS_0002ENSMUSG00000027454ENSMUST00000028948ENSMUST00000123217ENSMUST00000140950ENSMUST00000152991ENSMUSG00000053916ENSMUST00000066640ENSMUSG00000068115ENSMUST00000109896ENSMUST00000128564ENSMUST00000128627ENSMUST00000147293ENSMUSG00000082341ENSMUST00000121686ENSMUSG00000082375ENSMUST00000120236ENSMUSG00000084264ENSMUST00000117833
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101003 ENST00000262460 0.186±0.00 0.273±0.00 N/A 0.481±0.19 1.253±0.57 0.643±0.58 0.220±0.00 0.415±0.03 0.294±0.16 0.257±0.10 0.099±0.00 4.034±2.54 1.237±0.40 3.380±0.30
ENST00000473460 N/A N/A N/A 1.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481735 N/A N/A N/A N/A N/A N/A N/A 3.058±0.00 N/A N/A N/A N/A N/A N/A
ENST00000484893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101004 ENST00000278886 0.559±0.00 2.660±0.00 N/A 0.387±0.15 0.995±0.42 0.219±0.00 0.468±0.26 2.608±2.18 0.236±0.00 0.534±0.00 N/A 7.059±0.54 0.719±0.32 3.949±1.88
ENST00000336104 N/A N/A 6.796±0.00 N/A N/A N/A N/A 3.033±0.00 N/A 0.867±0.00 N/A N/A N/A N/A
ENST00000422516 0.405±0.00 N/A N/A 0.560±0.29 N/A N/A N/A N/A 0.104±0.00 N/A 0.011±0.00 1.121±0.00 1.260±0.00 2.250±1.59
ENST00000461642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464285 N/A 4.279±0.00 N/A 0.579±0.00 1.062±0.62 0.745±0.00 0.600±0.00 4.260±0.00 0.890±0.00 0.564±0.00 0.264±0.19 N/A N/A N/A
ENST00000489780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.28 N/A N/A N/A
ENST00000496509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027454 ENSMUST00000028948 0.980±0.30 0.812±0.27 1.497±0.61 5.980±4.50 0.794±0.40 0.888±0.40 0.824±0.15 0.411±0.16 12.140±12.78 0.365±0.12 0.876±0.21 2.157±0.96 7.583±4.98 6.533±2.22
ENSMUST00000123217 N/A N/A N/A N/A 0.219±0.00 N/A N/A 0.196±0.00 N/A N/A N/A 0.357±0.00 N/A N/A
ENSMUST00000140950 0.194±0.00 N/A N/A N/A 0.371±0.00 N/A N/A 0.134±0.00 N/A N/A N/A 0.903±0.00 N/A N/A
ENSMUST00000152991 N/A 0.460±0.00 N/A 1.413±0.00 N/A 0.822±0.00 0.995±0.00 N/A N/A N/A N/A N/A N/A 3.714±0.00
ENSMUSG00000053916 ENSMUST00000066640 N/A N/A 1.218±0.00 3.911±0.00 N/A 0.904±0.00 N/A N/A 5.570±9.30 N/A 0.147±0.05 N/A 0.995±0.09 N/A
ENSMUST00000140124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000068115 ENSMUST00000109896 1.295±0.76 6.373±0.48 1.640±0.11 3.065±0.67 0.359±0.10 0.667±0.14 0.270±0.06 4.180±0.61 3.848±4.75 1.013±0.17 0.079±0.03 6.634±1.78 0.938±0.43 9.585±0.43
ENSMUST00000124135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128564 N/A N/A N/A N/A N/A N/A N/A N/A 0.234±0.00 N/A 0.114±0.00 N/A N/A N/A
ENSMUST00000128627 N/A N/A N/A N/A N/A N/A 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.958±0.00
ENSMUST00000149268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082341 ENSMUST00000121686 0.184±0.00 0.185±0.00 N/A 0.176±0.06 0.167±0.00 N/A N/A 0.259±0.13 0.077±0.06 N/A 0.138±0.00 0.624±0.23 0.070±0.02 N/A
ENSMUSG00000082375 ENSMUST00000120236 0.199±0.00 0.126±0.00 0.022±0.00 N/A N/A N/A N/A 0.234±0.27 0.053±0.02 0.091±0.03 N/A 0.184±0.03 0.037±0.00 1.262±0.57
ENSMUSG00000084264 ENSMUST00000117833 N/A N/A 0.069±0.00 0.591±0.00 N/A N/A N/A N/A 0.190±0.13 N/A N/A 1.509±0.87 0.128±0.00 0.756±0.62

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