C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075650-ENSDARG00000063570 CGP 7955 10:202083-221073
GeneTranscriptPositionBiotype
ENSDARG00000075650 (dscr3)
Down syndrome critical region gene 3 		ENSDART00000036375 (dscr3-001) 202083-206924 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001CZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157538-ENSG00000157540 CGP 9606 21:37223420-37517450
GeneTranscriptPositionBiotype
ENSG00000157538 (DSCR3)
Down syndrome critical region gene 3 		ENST00000309117 (DSCR3-001) 37223420-37267532 protein_coding
ENST00000398998 (DSCR3-005) 37225544-37267532 protein_coding
ENST00000399000 (DSCR3-002) 37223420-37267919 processed_transcript
ENST00000399001 (DSCR3-006) 37225299-37267351 protein_coding
ENST00000462467 (DSCR3-010) 37261082-37267153 processed_transcript
ENST00000475009 (DSCR3-007) 37238205-37267403 retained_intron
ENST00000476950 (DSCR3-011) 37225472-37267346 protein_coding
ENST00000480452 (DSCR3-012) 37233292-37267318 processed_transcript
ENST00000488368 (DSCR3-003) 37225516-37267329 processed_transcript
ENST00000492514 (DSCR3-008) 37238356-37267301 processed_transcript
ENST00000495858 (DSCR3-013) 37230518-37233442 processed_transcript
ENST00000497493 (DSCR3-004) 37223420-37229483 retained_intron
ENST00000498789 (DSCR3-009) 37261082-37267340 processed_transcript
ENSG00000157540 (DYRK1A)
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 		ENST00000338785 (DYRK1A-001) 37367577-37515377 protein_coding
ENST00000339659 (DYRK1A-003) 37418905-37517450 protein_coding
ENST00000398956 (DYRK1A-008) 37420375-37511954 protein_coding
ENST00000398960 (DYRK1A-006) 37420300-37512586 protein_coding
ENST00000426672 (DYRK1A-005) 37367581-37480705 protein_coding
ENST00000455097 (DYRK1A-004) 37367581-37472811 protein_coding
ENST00000462274 (DYRK1A-002) 37366934-37486481 processed_transcript
ENST00000498351 (DYRK1A-007) 37420325-37472715 processed_transcript
ENST00000608928 (DYRK1A-009) 37365790-37420385 processed_transcript
ENSG00000242553 (AP001432.14)
 ENST00000440629 (AP001432.14-001) 37221419-37237744 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001CZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022898-ENSMUSG00000022897 CGP 10090 16:94497783-94695517
GeneTranscriptPositionBiotype
ENSMUSG00000022897 (Dyrk1a)
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a 		ENSMUST00000023614 (Dyrk1a-201) 94570907-94695517 protein_coding
ENSMUST00000119878 (Dyrk1a-001) 94570010-94695067 protein_coding
ENSMUST00000122284 (Dyrk1a-002) 94570479-94692201 protein_coding
ENSMUST00000134383 (Dyrk1a-005) 94668896-94679521 retained_intron
ENSMUST00000139250 (Dyrk1a-003) 94570864-94665947 protein_coding
ENSMUST00000155791 (Dyrk1a-004) 94570907-94668831 protein_coding
ENSMUSG00000022898 (Dscr3)
Down syndrome critical region gene 3 		ENSMUST00000023615 (Dscr3-001) 94497783-94526830 protein_coding
ENSMUST00000125229 (Dscr3-005) 94502107-94510893 processed_transcript
ENSMUST00000127449 (Dscr3-002) 94504187-94526432 retained_intron
ENSMUST00000133944 (Dscr3-003) 94510166-94526441 retained_intron
ENSMUST00000142988 (Dscr3-004) 94511860-94526417 retained_intron
ENSMUSG00000081692 (Gm15971)
predicted gene 15971 		ENSMUST00000119372 (Gm15971-001) 94620377-94620587 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CZ_0001ENSDARG00000075650ENSDART00000036375CIL_0001CZ_0002ENSG00000157538ENST00000309117ENST00000398998ENST00000399000ENST00000399001ENST00000462467ENST00000475009ENST00000476950ENST00000480452ENST00000488368ENST00000492514ENST00000495858ENST00000497493ENST00000498789ENSG00000157540ENST00000338785ENST00000339659ENST00000398956ENST00000398960ENST00000426672ENST00000455097ENST00000462274ENST00000498351ENST00000608928ENSG00000242553ENST00000440629CIL_0001CZ_0003ENSMUSG00000022897ENSMUST00000023614ENSMUST00000119878ENSMUST00000122284ENSMUST00000134383ENSMUST00000139250ENSMUST00000155791ENSMUSG00000022898ENSMUST00000023615ENSMUST00000125229ENSMUST00000127449ENSMUST00000133944ENSMUST00000142988ENSMUSG00000081692ENSMUST00000119372
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CZ_0001ENSDARG00000075650ENSDART00000036375CIL_0001CZ_0002ENSG00000157538ENST00000309117ENST00000398998ENST00000399000ENST00000476950ENST00000488368ENST00000497493ENST00000498789ENSG00000157540ENST00000338785ENST00000339659ENST00000398960ENST00000462274ENSG00000242553ENST00000440629CIL_0001CZ_0003ENSMUSG00000022897ENSMUST00000023614ENSMUST00000119878ENSMUST00000122284ENSMUST00000155791ENSMUSG00000022898ENSMUST00000023615ENSMUST00000125229ENSMUST00000127449ENSMUSG00000081692ENSMUST00000119372
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000075650 ENSDART00000036375 N/A N/A N/A 9.907±2.01 N/A N/A 11.241±3.53 1.846±0.00 2.096±0.00 N/A 6.184±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157538 ENST00000309117 9.335±0.00 7.726±0.00 3.649±0.00 4.086±2.68 8.859±0.00 4.842±2.11 6.720±4.82 9.174±6.73 6.051±1.98 4.244±3.12 7.940±6.75 9.406±3.89 12.464±0.94 4.932±0.68
ENST00000398998 N/A N/A N/A N/A N/A N/A N/A 2.322±0.00 N/A N/A N/A N/A N/A N/A
ENST00000399000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.12
ENST00000399001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476950 N/A N/A N/A N/A 3.468±0.00 N/A N/A N/A N/A 2.848±0.00 N/A N/A N/A N/A
ENST00000480452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.140±0.00 N/A N/A
ENST00000492514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497493 N/A 1.016±0.00 N/A 0.284±0.00 N/A N/A 0.302±0.00 N/A N/A N/A N/A 0.600±0.00 N/A N/A
ENST00000498789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.193±0.00 N/A 2.802±0.26
ENSG00000157540 ENST00000338785 N/A N/A 2.913±0.00 7.071±0.00 6.617±0.00 4.186±0.00 3.467±0.00 1.799±0.00 4.832±1.25 7.563±0.00 1.966±0.00 9.132±4.94 6.289±1.71 9.419±6.23
ENST00000339659 N/A N/A 0.520±0.00 N/A 1.463±0.00 1.187±0.00 0.426±0.00 N/A 1.299±0.00 1.641±0.00 N/A 1.601±0.00 N/A N/A
ENST00000398956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398960 N/A N/A 2.413±0.00 6.138±0.00 N/A 2.127±0.00 1.843±0.00 1.900±0.00 N/A N/A 4.147±0.00 N/A N/A 5.972±0.00
ENST00000426672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462274 N/A N/A N/A 13.339±0.00 N/A 8.327±0.00 6.796±0.00 N/A 16.630±0.00 9.655±0.00 15.299±0.00 19.916±0.00 N/A N/A
ENST00000498351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242553 ENST00000440629 N/A N/A N/A 0.423±0.00 0.425±0.00 0.079±0.00 0.365±0.00 N/A 0.073±0.00 N/A N/A 0.467±0.23 0.221±0.13 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022897 ENSMUST00000023614 N/A 3.125±0.26 N/A N/A 4.915±1.19 4.145±0.00 N/A N/A 1.116±0.23 3.661±0.00 N/A 4.479±2.09 N/A N/A
ENSMUST00000119878 6.800±2.14 2.162±0.24 3.795±0.48 11.637±0.35 5.235±1.27 5.238±1.72 6.729±0.32 4.923±0.67 3.771±2.23 7.683±0.97 4.438±0.66 6.817±2.31 8.900±2.04 2.921±0.89
ENSMUST00000122284 8.269±0.89 11.996±1.53 N/A 8.757±1.11 14.205±1.62 11.330±2.12 6.216±0.33 7.096±1.93 4.272±1.27 11.095±2.78 N/A 14.054±4.81 11.193±1.78 3.886±0.97
ENSMUST00000134383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.915±0.00
ENSMUSG00000022898 ENSMUST00000023615 23.510±1.53 14.523±1.59 19.714±0.47 13.072±10.10 21.847±6.75 12.065±0.76 12.325±0.39 14.402±2.02 9.993±2.43 17.036±2.58 3.469±1.16 16.149±3.14 28.070±9.63 4.663±1.71
ENSMUST00000125229 N/A N/A N/A 9.940±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 39.076±0.00 2.991±0.00
ENSMUST00000127449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.092±0.00 N/A 16.063±0.00 3.983±0.00
ENSMUST00000133944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081692 ENSMUST00000119372 N/A N/A 0.377±0.06 0.674±0.33 N/A N/A N/A N/A 0.313±0.01 N/A N/A N/A 0.939±0.00 2.696±0.00

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