C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119156 Rpl17-ps1-001 ENSMUSG00000082804 10090 + 1:61075674-61076225 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000119156
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000119156 0.269±0.07 0.060±0.02 0.799±0.00 0.139±0.05 0.117±0.00 0.016±0.01 0.167±0.00 0.121±0.00 0.451±0.00 0.095±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001R0 CIL_0001R0_0002 CGP 1:60977927-62642284

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 481
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 531
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 566
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 534
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 538
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 645
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 359
ENST00000417063 AC020983.5-001 processed_pseudogene Homo_sapiens 0 531
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 645
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 616
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 438
ENST00000429025 CTA-440B3.1-001 processed_pseudogene Homo_sapiens 0 361
ENST00000432914 AC069154.4-001 processed_pseudogene Homo_sapiens 0 433
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 0 261
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 4.99983e-42 174
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 562
ENST00000445304 RPL17P1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 329
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 549
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 579
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 532
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 420
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 523
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 588
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 477
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 645
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 505
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 364
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 628
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 579
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 267
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 645
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 590
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 645
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 645
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 481
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 606
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 645
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 440
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 486
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 545
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 374
ENST00000582588 RPL17-020 retained_intron Homo_sapiens 0 257
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 252
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 479
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 601
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 549
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 580
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 311
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 449
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 580
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 645
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 645

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