C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 3851
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168653 Gm3851-001 ENSMUSG00000091876 10090 + 1:119787769-119788086 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000168653
Transcript ID Adipose Bladder Brain Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000168653 0.259±0.00 1.051±0.24 1.078±0.53 0.484±0.00 0.241±0.03 0.878±0.81 0.308±0.03 0.608±0.14 0.468±0.40 0.740±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WE CIL_0003WE_0002 CGP 1:119545037-119837613
CIL_0001TM CIL_0001TM_0002 CGP 1:119652467-119913208
CIL_00093M CIL_00093M_0002 VISTA 1:119723864-120325096

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 303
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 377
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 377
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 303
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 377
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 377
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 305
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 279
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 355
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 198
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 388

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