C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8338
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163928 Gm8338-001 ENSMUSG00000090277 10090 + 1:119817763-119818125 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLiverLungOvaryPlacentaTestisENSMUST00000163928
Transcript ID Bladder Heart Liver Lung Ovary Placenta Testis
ENSMUST00000163928 0.509±0.00 0.164±0.00 0.223±0.00 0.333±0.07 1.245±0.53 0.093±0.00 0.276±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WE CIL_0003WE_0002 CGP 1:119545037-119837613
CIL_0001TM CIL_0001TM_0002 CGP 1:119652467-119913208
CIL_00093M CIL_00093M_0002 VISTA 1:119723864-120325096

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228306 RPLP0-201 protein_coding Homo_sapiens 0 233
ENST00000313104 RPLP0-003 protein_coding Homo_sapiens 0 233
ENST00000392514 RPLP0-001 protein_coding Homo_sapiens 0 233
ENST00000394878 RPLP0P6-001 processed_pseudogene Homo_sapiens 0 228
ENST00000445179 RP1-140J1.4-001 processed_pseudogene Homo_sapiens 4.00001e-41 172
ENST00000448115 RP11-302I18.1-001 processed_pseudogene Homo_sapiens 1e-37 161
ENST00000546564 RPLP0-022 retained_intron Homo_sapiens 0 233
ENST00000546989 RPLP0-008 protein_coding Homo_sapiens 0 233
ENST00000546990 RPLP0-025 protein_coding Homo_sapiens 0 233
ENST00000547173 RPLP0-026 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000547191 RPLP0-014 protein_coding Homo_sapiens 0.000000002 68
ENST00000547211 RPLP0-019 protein_coding Homo_sapiens 0.0000000001 71
ENST00000547475 RPLP0-027 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000548495 RPLP0-012 retained_intron Homo_sapiens 5e-34 148
ENST00000548551 RPLP0-011 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000548568 RPLP0-016 retained_intron Homo_sapiens 0 233
ENST00000549098 RPLP0-013 nonsense_mediated_decay Homo_sapiens 1.96182e-44 183
ENST00000549242 RPLP0-010 retained_intron Homo_sapiens 0 198
ENST00000550296 RPLP0-020 processed_transcript Homo_sapiens 0 233
ENST00000550423 RPLP0-015 protein_coding Homo_sapiens 0.000000001 68
ENST00000550856 RPLP0-009 protein_coding Homo_sapiens 0 233
ENST00000551150 RPLP0-002 protein_coding Homo_sapiens 0 233
ENST00000551258 RPLP0-024 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000551336 RPLP0-017 processed_transcript Homo_sapiens 0.0000000009 68
ENST00000551783 RPLP0-018 retained_intron Homo_sapiens 0 198
ENST00000551914 RPLP0-021 protein_coding Homo_sapiens 0 233
ENST00000552461 RPLP0-004 retained_intron Homo_sapiens 0.000000006 68
ENST00000552902 RPLP0-023 retained_intron Homo_sapiens 0 233
ENST00000588088 RP11-824M15.3-002 processed_transcript Homo_sapiens 2.8026e-45 185
ENST00000592549 RP11-824M15.3-001 transcribed_processed_pseudogene Homo_sapiens 5.60519e-45 185

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