C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107796-ENSG00000026103 CGP 9606 10:88935074-89015785
GeneTranscriptPositionBiotype
ENSG00000107796 (ACTA2)
actin, alpha 2, smooth muscle, aorta 		ENST00000224784 (ACTA2-001) 88935074-88952773 protein_coding
ENST00000415557 (ACTA2-002) 88941785-88991339 protein_coding
ENST00000458159 (ACTA2-003) 88941785-88991288 protein_coding
ENST00000458208 (ACTA2-201) 88935076-88991390 protein_coding
ENST00000480297 (ACTA2-006) 88941001-88952747 processed_transcript
ENST00000482085 (ACTA2-004) 88948242-88952773 processed_transcript
ENST00000488967 (ACTA2-005) 88946820-88952773 processed_transcript
ENSG00000138134 (STAMBPL1)
STAM binding protein-like 1 		ENST00000371922 (STAMBPL1-004) 88912356-88923487 protein_coding
ENST00000371924 (STAMBPL1-003) 88901075-88923487 protein_coding
ENST00000371926 (STAMBPL1-001) 88879734-88923487 protein_coding
ENST00000371927 (STAMBPL1-002) 88879734-88975153 protein_coding
ENST00000461650 (STAMBPL1-005) 88880224-88893913 processed_transcript
ENST00000468698 (STAMBPL1-006) 88882083-88882857 processed_transcript
ENSG00000180139 (ACTA2-AS1)
ACTA2 antisense RNA 1 		ENST00000437930 (ACTA2-AS1-001) 88932643-88940340 antisense
ENST00000596007 (ACTA2-AS1-003) 88939475-88940611 antisense
ENSG00000275693 (FAS-AS1)
FAS antisense RNA 1 conserved region 		ENST00000620386 (FAS-AS1.1-202) 88992370-88992539 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0001VG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035783-ENSMUSG00000024778 CGP 10090 19:34241090-34327770
GeneTranscriptPositionBiotype
ENSMUSG00000024778 (Fas)
Fas (TNF receptor superfamily member 6) 		ENSMUST00000025691 (Fas-201) 34290659-34327770 protein_coding
ENSMUST00000112472 (Fas-202) 34290659-34309350 protein_coding
ENSMUSG00000035783 (Acta2)
actin, alpha 2, smooth muscle, aorta 		ENSMUST00000039631 (Acta2-201) 34241090-34255336 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VG_0001ENSG00000107796ENST00000224784ENST00000415557ENST00000458159ENST00000458208ENST00000480297ENST00000482085ENST00000488967ENSG00000138134ENST00000371922ENST00000371924ENST00000371926ENST00000371927ENST00000461650ENST00000468698ENSG00000180139ENST00000437930ENST00000596007ENSG00000275693ENST00000620386CIL_0001VG_0002ENSMUSG00000024778ENSMUST00000025691ENSMUST00000112472ENSMUSG00000035783ENSMUST00000039631
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VG_0001ENSG00000107796ENST00000224784ENST00000480297ENSG00000138134ENST00000371922ENST00000371924ENST00000371926ENST00000371927ENSG00000180139ENST00000437930ENSG00000275693ENST00000620386CIL_0001VG_0002ENSMUSG00000024778ENSMUST00000025691ENSMUST00000112472ENSMUSG00000035783ENSMUST00000039631
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107796 ENST00000224784 247.266±0.00 1046.020±0.00 14.679±0.00 21.065±13.70 256.316±74.65 443.515±313.59 48.897±26.26 132.740±125.46 306.229±258.71 392.149±335.37 102.044±65.32 502.267±427.23 766.020±366.91 547.593±435.83
ENST00000415557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480297 N/A N/A 12.879±0.00 2.085±0.00 N/A N/A N/A N/A N/A N/A 18.514±0.00 25.434±0.00 N/A N/A
ENST00000482085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138134 ENST00000371922 0.080±0.00 1.267±0.00 N/A 0.716±0.00 1.888±0.00 0.298±0.00 0.172±0.00 0.194±0.02 N/A 0.845±0.00 0.118±0.04 1.506±0.25 0.220±0.00 N/A
ENST00000371924 N/A N/A N/A N/A 0.203±0.00 0.986±0.00 N/A N/A 0.399±0.00 1.228±0.00 N/A 1.483±0.00 N/A N/A
ENST00000371926 0.389±0.00 2.484±0.00 0.157±0.00 3.085±0.33 0.893±0.00 1.448±0.00 0.358±0.00 0.366±0.00 0.404±0.00 2.130±0.00 N/A 9.753±6.92 1.230±0.68 17.672±10.47
ENST00000371927 0.050±0.00 N/A 0.069±0.00 N/A 0.121±0.00 N/A 0.073±0.01 0.048±0.00 0.239±0.00 N/A 0.016±0.00 N/A N/A N/A
ENST00000461650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180139 ENST00000437930 N/A N/A N/A 0.742±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275693 ENST00000620386 N/A 0.604±0.00 N/A N/A 0.070±0.00 N/A N/A N/A 4.319±0.00 0.940±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024778 ENSMUST00000025691 3.642±2.40 0.526±0.23 6.166±0.14 0.137±0.04 2.348±1.55 1.171±0.36 2.622±0.47 2.160±0.55 3.472±2.51 7.655±1.29 1.800±0.63 0.885±0.59 3.274±3.62 0.183±0.13
ENSMUST00000112472 N/A N/A N/A N/A N/A N/A N/A 0.955±0.00 N/A N/A N/A N/A N/A 0.139±0.04
ENSMUSG00000035783 ENSMUST00000039631 903.057±677.48 21.380±0.88 N/A 5.270±1.84 250.381±47.21 1261.605±179.42 249.774±61.43 67.945±28.35 8.600±6.37 291.292±45.12 7.057±3.13 1091.747±487.18 92.640±106.73 58.541±31.58

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