C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 2, smooth muscle, aorta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039631 Acta2-201 ENSMUSG00000035783 10090 - 19:34241090-34255336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039631
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039631 903.057±677.48 21.380±0.88 5.270±1.84 250.381±47.21 1261.605±179.42 249.774±61.43 67.945±28.35 8.600±6.37 291.292±45.12 7.057±3.13 1091.747±487.18 92.640±106.73 58.541±31.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IX CIL_0001IX_0002 CGP 19:34192229-34255336
CIL_0001VG CIL_0001VG_0002 CGP 19:34241090-34327770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005737 ISO cytoplasm
GO:0005856 IDA cytoskeleton
GO:0008217 IMP regulation of blood pressure
GO:0009615 IEA response to virus
GO:0014829 IMP vascular smooth muscle contraction
GO:0015629 IDA actin cytoskeleton
GO:0019901 IPI protein kinase binding
GO:0030485 IDA smooth muscle contractile fiber
GO:0043234 IEA protein complex
GO:0070062 IEA extracellular vesicular exosome
GO:0072144 IEA glomerular mesangial cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1192
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 1153
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 1153
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 1131
ENSDART00000080664 protein_coding Danio_rerio 0 1131
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 1125
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1042
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1042
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 1033
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 953
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 726
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 601
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 573
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 569
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 484
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 420
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 0 228
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1674
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1014
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 976
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1146
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 335
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1157
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 880
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1146
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 896
ENST00000415557 ACTA2-002 protein_coding Homo_sapiens 0 647
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 689
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 850
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 664
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 459
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 833
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 483
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 566
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 689
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 896
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 749
ENST00000458159 ACTA2-003 protein_coding Homo_sapiens 0 647
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1635
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 736
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 303
ENST00000480297 ACTA2-006 processed_transcript Homo_sapiens 0 885
ENST00000482085 ACTA2-004 processed_transcript Homo_sapiens 0 254
ENST00000488967 ACTA2-005 processed_transcript Homo_sapiens 0 418
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 566
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 348
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 588
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 795
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 333
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 976
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 726
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 976
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 976
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 931
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 976
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 344
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 976

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