C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000248_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140374-ENSG00000159556 CGP 9606 15:76215355-76342476
GeneTranscriptPositionBiotype
ENSG00000140374 (ETFA)
electron-transfer-flavoprotein, alpha polypeptide 		ENST00000267950 (ETFA-015) 76216250-76311448 nonsense_mediated_decay
ENST00000433983 (ETFA-002) 76216084-76311404 protein_coding
ENST00000557943 (ETFA-001) 76215355-76311469 protein_coding
ENST00000557975 (ETFA-018) 76216130-76228249 retained_intron
ENST00000558803 (ETFA-009) 76274133-76283841 retained_intron
ENST00000559075 (ETFA-003) 76230504-76311412 retained_intron
ENST00000559386 (ETFA-011) 76274483-76311413 protein_coding
ENST00000559602 (ETFA-014) 76216483-76311414 protein_coding
ENST00000559758 (ETFA-008) 76274176-76292622 retained_intron
ENST00000559973 (ETFA-017) 76216559-76292491 protein_coding
ENST00000560044 (ETFA-004) 76231378-76311472 nonsense_mediated_decay
ENST00000560179 (ETFA-016) 76216435-76226335 retained_intron
ENST00000560309 (ETFA-005) 76286406-76311443 nonsense_mediated_decay
ENST00000560345 (ETFA-012) 76274419-76292698 protein_coding
ENST00000560595 (ETFA-019) 76216583-76311396 protein_coding
ENST00000560726 (ETFA-006) 76216468-76311466 protein_coding
ENST00000560816 (ETFA-010) 76245212-76286491 processed_transcript
ENST00000560899 (ETFA-007) 76225905-76311414 nonsense_mediated_decay
ENST00000561092 (ETFA-013) 76287768-76311402 retained_intron
ENST00000565910 (ETFA-020) 76216321-76231398 nonsense_mediated_decay
ENSG00000159556 (ISL2)
ISL LIM homeobox 2 		ENST00000290759 (ISL2-001) 76336724-76342476 protein_coding
ENST00000558437 (ISL2-003) 76337438-76338514 retained_intron
ENST00000558656 (ISL2-002) 76336808-76342388 nonsense_mediated_decay
ENSG00000169758 (C15orf27)
chromosome 15 open reading frame 27 		ENST00000388942 (C15orf27-001) 76059837-76204963 protein_coding
ENST00000484722 (C15orf27-002) 76059958-76204962 nonsense_mediated_decay
ENST00000558249 (C15orf27-003) 76191469-76204962 retained_intron
ENST00000559079 (C15orf27-004) 76059985-76114203 processed_transcript
ENST00000561302 (C15orf27-005) 76059985-76229121 nonsense_mediated_decay
ENSG00000196274 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000360440 (Metazoa_SRP.1-201) 76230048-76230390 misc_RNA
ENSG00000259514 (RP11-685G9.2)
 ENST00000559539 (RP11-685G9.2-001) 76339609-76342063 antisense
ENSG00000259581 (TYRO3P)
TYRO3P protein tyrosine kinase pseudogene 		ENST00000558165 (TYRO3P-001) 76258986-76261690 processed_pseudogene
CIL_000248_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032314-ENSMUSG00000032318 CGP 10090 9:55454508-55546180
GeneTranscriptPositionBiotype
ENSMUSG00000032314 (Etfa)
electron transferring flavoprotein, alpha polypeptide 		ENSMUST00000034866 (Etfa-001) 55454508-55512243 protein_coding
ENSMUST00000139342 (Etfa-004) 55474537-55487513 processed_transcript
ENSMUST00000142587 (Etfa-002) 55488826-55511808 processed_transcript
ENSMUST00000153186 (Etfa-003) 55486737-55512120 processed_transcript
ENSMUSG00000032318 (Isl2)
insulin related protein 2 (islet 2) 		ENSMUST00000034869 (Isl2-001) 55541148-55546180 protein_coding
ENSMUST00000114290 (Isl2-002) 55541207-55546180 nonsense_mediated_decay
ENSMUST00000164373 (Isl2-003) 55541207-55546178 nonsense_mediated_decay
ENSMUST00000165302 (Isl2-005) 55542336-55544280 retained_intron
ENSMUST00000175950 (Isl2-004) 55538672-55542570 protein_coding
ENSMUSG00000090270 (Gm17226)
predicted gene 17226 		ENSMUST00000166637 (Gm17226-002) 55539560-55540888 antisense
ENSMUST00000171441 (Gm17226-001) 55539549-55540547 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000248_0001ENSG00000140374ENST00000267950ENST00000433983ENST00000557943ENST00000559075ENST00000559602ENST00000560044ENST00000560179ENST00000560595ENST00000560726ENSG00000159556ENST00000290759ENST00000558437ENST00000558656ENSG00000169758ENST00000388942ENST00000484722ENST00000558249ENST00000559079ENST00000561302ENSG00000196274ENST00000360440ENSG00000259514ENST00000559539ENSG00000259581ENST00000558165CIL_000248_0002ENSMUSG00000032314ENSMUST00000034866ENSMUST00000139342ENSMUST00000142587ENSMUSG00000032318ENSMUST00000034869ENSMUST00000114290ENSMUST00000164373ENSMUST00000165302ENSMUST00000175950ENSMUSG00000090270ENSMUST00000166637ENSMUST00000171441
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140374 ENST00000267950 N/A 14.514±0.00 1.997±0.00 6.883±1.00 6.056±3.28 9.990±3.03 21.809±13.49 16.360±5.87 23.526±21.00 5.057±1.91 16.118±0.53 18.183±0.00 13.543±2.53 13.956±0.00
ENST00000433983 N/A N/A 5.722±0.00 8.251±0.00 2.383±0.00 4.497±0.00 N/A N/A 3.240±0.00 N/A N/A 8.235±1.72 13.054±5.53 N/A
ENST00000557943 N/A N/A N/A N/A N/A 2.511±0.00 N/A 4.444±0.00 N/A 1.396±0.00 N/A 2.251±0.00 N/A 1.920±0.00
ENST00000557975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.728±0.00
ENST00000559386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559602 N/A 25.890±0.00 N/A 14.140±0.00 N/A N/A N/A N/A N/A N/A N/A 13.253±0.00 13.964±0.00 11.618±6.46
ENST00000559758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560044 N/A N/A N/A N/A 5.439±0.00 N/A N/A N/A N/A N/A N/A N/A 18.272±0.00 N/A
ENST00000560179 N/A N/A N/A N/A 6.934±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560595 N/A N/A N/A 9.925±0.00 13.200±0.00 N/A 49.210±0.00 23.225±0.00 17.559±12.38 6.695±0.00 23.127±0.00 20.053±7.58 20.901±3.95 10.440±1.42
ENST00000560726 N/A N/A N/A N/A N/A 10.392±0.00 N/A N/A N/A 2.911±0.00 16.718±0.00 7.913±0.00 N/A N/A
ENST00000560816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159556 ENST00000290759 N/A N/A N/A 0.038±0.00 0.145±0.00 0.290±0.13 N/A N/A N/A 0.136±0.00 N/A 0.145±0.00 N/A 0.558±0.35
ENST00000558437 0.032±0.00 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 0.822±0.00
ENST00000558656 N/A 0.021±0.00 N/A N/A 0.023±0.00 0.201±0.01 N/A N/A N/A N/A N/A 0.281±0.23 0.040±0.00 0.186±0.00
ENSG00000169758 ENST00000388942 N/A N/A N/A 0.674±0.58 N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 1.596±0.00 N/A
ENST00000484722 N/A 0.501±0.00 0.328±0.00 0.859±0.00 0.161±0.00 N/A N/A N/A N/A 0.275±0.00 1.030±0.75 N/A 3.287±1.20 2.657±0.00
ENST00000558249 N/A N/A 0.177±0.00 N/A N/A 0.029±0.00 N/A 0.735±0.52 N/A N/A N/A 0.221±0.22 N/A N/A
ENST00000559079 N/A N/A N/A N/A 0.159±0.00 0.022±0.01 N/A N/A N/A 0.119±0.09 N/A 0.049±0.00 N/A N/A
ENST00000561302 N/A N/A 0.298±0.00 0.242±0.00 0.878±0.33 0.225±0.00 0.019±0.00 N/A N/A 0.099±0.00 0.761±0.00 0.705±0.46 3.884±0.00 N/A
ENSG00000196274 ENST00000360440 0.379±0.00 0.593±0.00 N/A 0.407±0.00 0.360±0.00 0.096±0.00 0.106±0.00 0.327±0.00 N/A 0.285±0.00 0.050±0.00 0.608±0.51 0.221±0.00 0.329±0.02
ENSG00000259514 ENST00000559539 N/A N/A N/A 0.053±0.00 N/A N/A N/A 0.048±0.00 N/A 0.435±0.00 N/A 0.164±0.00 0.216±0.00 0.501±0.13
ENSG00000259581 ENST00000558165 0.007±0.00 0.172±0.00 0.588±0.00 0.118±0.08 0.109±0.08 0.458±0.00 0.100±0.06 0.146±0.09 0.199±0.18 1.073±0.00 0.776±0.00 0.190±0.25 0.023±0.00 0.017±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032314 ENSMUST00000034866 79.893±27.42 109.968±74.91 41.380±1.47 12.728±2.59 87.707±11.37 49.997±15.17 189.726±6.67 126.987±13.33 145.789±40.20 36.134±2.95 59.364±15.30 50.502±14.95 39.228±18.70 8.572±3.07
ENSMUST00000139342 N/A N/A N/A 8.969±0.00 N/A N/A N/A N/A N/A N/A N/A 46.121±6.89 17.046±0.91 19.338±0.00
ENSMUST00000142587 50.372±0.00 N/A N/A N/A 56.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032318 ENSMUST00000034869 0.146±0.02 N/A 0.112±0.06 0.519±0.31 N/A 1.242±0.30 N/A 0.017±0.00 0.095±0.07 N/A N/A 0.200±0.13 0.143±0.00 N/A
ENSMUST00000114290 0.010±0.00 0.016±0.00 N/A 0.018±0.00 0.016±0.01 N/A 0.016±0.00 0.004±0.00 N/A 0.008±0.00 N/A 0.168±0.13 0.512±0.62 N/A
ENSMUST00000164373 0.012±0.00 0.005±0.00 N/A 0.014±0.00 0.023±0.01 N/A 0.017±0.01 0.015±0.00 N/A 0.009±0.00 N/A 0.135±0.16 0.118±0.10 0.160±0.00
ENSMUST00000165302 0.212±0.00 N/A N/A N/A 0.081±0.01 1.360±0.27 N/A N/A N/A 0.098±0.05 N/A 0.560±0.34 N/A 0.378±0.05
ENSMUST00000175950 N/A N/A N/A N/A N/A N/A N/A 0.055±0.01 N/A N/A N/A N/A 0.088±0.00 N/A
ENSMUSG00000090270 ENSMUST00000166637 N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A
ENSMUST00000171441 N/A N/A 0.033±0.00 0.034±0.01 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.068±0.00 0.123±0.00

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