C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5527
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179821 RP24-388H6.4-001 ENSMUSG00000100007 10090 + 1:52584518-52585159 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000179821
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179821 0.221±0.01 0.220±0.10 0.188±0.00 0.312±0.00 0.067±0.00 0.147±0.12 0.109±0.00 0.079±0.00 0.281±0.14 0.063±0.05 0.149±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RZ CIL_0002RZ_0002 CGP 1:52457294-52651919

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 854
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 634
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 876
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 876
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 704
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 634
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 876
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 592
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 876
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 599
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 704
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 702
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 403
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 479
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 675
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 505
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 665
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 580
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 217
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 233
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 375
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 782
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 261
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 835
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 187
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 667

Loading