C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101444-ENSG00000078747 CGP 9606 20:34280268-34511393
GeneTranscriptPositionBiotype
ENSG00000078747 (ITCH)
itchy E3 ubiquitin protein ligase 		ENST00000262650 (ITCH-002) 34363312-34508035 protein_coding
ENST00000374864 (ITCH-001) 34363235-34511393 protein_coding
ENST00000461661 (ITCH-007) 34471501-34481182 processed_transcript
ENST00000479215 (ITCH-004) 34363295-34369543 processed_transcript
ENST00000483727 (ITCH-005) 34445361-34481176 processed_transcript
ENST00000486883 (ITCH-003) 34363241-34413879 processed_transcript
ENST00000535650 (ITCH-201) 34393768-34511392 protein_coding
ENST00000610336 (ITCH-202) 34393768-34511392 protein_coding
ENST00000621101 (ITCH-203) 34393768-34511392 protein_coding
ENSG00000101444 (AHCY)
adenosylhomocysteinase 		ENST00000217426 (AHCY-002) 34280268-34303348 protein_coding
ENST00000468908 (AHCY-004) 34291465-34301948 processed_transcript
ENST00000473516 (AHCY-005) 34295429-34302675 processed_transcript
ENST00000480653 (AHCY-001) 34280270-34303317 retained_intron
ENST00000538132 (AHCY-006) 34280270-34311802 protein_coding
ENST00000606061 (AHCY-007) 34293466-34303357 retained_intron
ENSG00000181741 (FDX1P1)
ferredoxin 1 pseudogene 1 		ENST00000449115 (FDX1P1-001) 34475924-34476474 processed_pseudogene
ENSG00000201498 (Y_RNA)
Y RNA 		ENST00000364628 (Y_RNA.1-462) 34384165-34384265 misc_RNA
ENSG00000207997 (MIR644A)
microRNA 644a 		ENST00000385262 (MIR644A-201) 34466325-34466418 miRNA
ENSG00000231795 (ITCH-IT1)
ITCH intronic transcript 1 (non-protein coding) 		ENST00000418598 (ITCH-IT1-001) 34450930-34454552 sense_intronic
ENSG00000234933 (CDC42P1)
cell division cycle 42 pseudogene 1 		ENST00000456658 (CDC42P1-001) 34402149-34402696 processed_pseudogene
ENSG00000236388 (ITCH-AS1)
ITCH antisense RNA 1 		ENST00000454205 (ITCH-AS1-001) 34441592-34442025 antisense
ENSG00000272945 (CTD-3216D2.5)
 ENST00000609218 (CTD-3216D2.5-001) 34281632-34286466 sense_intronic
ENSG00000277558 (RP3-468O1.6)
 ENST00000618799 (RP3-468O1.6-001) 34476205-34476787 sense_intronic
CIL_0003SW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027597-ENSMUSG00000027598 CGP 10090 2:155059310-155226855
GeneTranscriptPositionBiotype
ENSMUSG00000027597 (Ahcy)
S-adenosylhomocysteine hydrolase 		ENSMUST00000054607 (Ahcy-001) 155059310-155074497 protein_coding
ENSMUST00000137242 (Ahcy-003) 155065660-155074447 protein_coding
ENSMUST00000146367 (Ahcy-002) 155068566-155074447 retained_intron
ENSMUSG00000027598 (Itch)
itchy, E3 ubiquitin protein ligase 		ENSMUST00000029126 (Itch-001) 155133509-155226855 protein_coding
ENSMUST00000109685 (Itch-002) 155133559-155226853 protein_coding
ENSMUST00000123497 (Itch-004) 155133561-155212594 retained_intron
ENSMUST00000126648 (Itch-007) 155133509-155139289 retained_intron
ENSMUST00000138468 (Itch-005) 155133524-155177147 retained_intron
ENSMUST00000142147 (Itch-003) 155133531-155202710 processed_transcript
ENSMUST00000155360 (Itch-006) 155133509-155174289 retained_intron
ENSMUSG00000082596 (Gm14227)
predicted gene 14227 		ENSMUST00000119431 (Gm14227-001) 155198632-155199260 processed_pseudogene
ENSMUSG00000087254 (2310005A03Rik)
RIKEN cDNA 2310005A03 gene 		ENSMUST00000142569 (2310005A03Rik-001) 155097789-155100081 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SW_0001ENSG00000078747ENST00000262650ENST00000374864ENST00000486883ENST00000535650ENST00000610336ENSG00000101444ENST00000217426ENST00000480653ENSG00000181741ENST00000449115ENSG00000201498ENST00000364628ENSG00000207997ENST00000385262ENSG00000231795ENST00000418598ENSG00000234933ENST00000456658ENSG00000236388ENST00000454205ENSG00000272945ENST00000609218ENSG00000277558ENST00000618799CIL_0003SW_0002ENSMUSG00000027597ENSMUST00000054607ENSMUST00000137242ENSMUSG00000027598ENSMUST00000029126ENSMUST00000109685ENSMUST00000138468ENSMUST00000142147ENSMUST00000155360ENSMUSG00000082596ENSMUST00000119431ENSMUSG00000087254ENSMUST00000142569
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078747 ENST00000262650 2.696±0.00 N/A 2.822±0.00 2.658±0.09 7.589±0.00 9.205±0.00 2.064±0.60 4.691±0.00 5.925±0.00 5.876±0.00 2.013±0.00 4.501±1.36 3.706±0.00 10.594±3.26
ENST00000374864 4.047±0.00 N/A 2.077±0.00 2.945±0.00 3.928±2.41 2.022±0.00 0.905±0.20 6.923±0.00 2.431±0.20 N/A 0.419±0.00 2.300±1.04 1.916±0.51 3.603±0.00
ENST00000461661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.714±0.00 N/A N/A N/A
ENST00000535650 N/A 1.921±0.00 N/A 1.275±0.00 N/A N/A 1.039±0.00 N/A N/A N/A N/A 1.719±0.00 N/A 2.417±0.00
ENST00000610336 2.628±0.00 1.294±0.00 N/A N/A 3.662±0.00 2.380±0.75 3.756±0.00 N/A N/A N/A 6.849±0.00 4.853±1.28 2.326±0.81 2.778±1.71
ENST00000621101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101444 ENST00000217426 20.036±0.00 31.217±0.00 2.134±0.00 10.670±4.05 15.602±11.32 24.797±18.08 13.814±12.11 32.929±12.55 32.327±29.14 14.242±12.45 26.449±0.00 78.756±49.80 60.700±14.18 85.591±26.68
ENST00000468908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480653 N/A N/A N/A N/A 1.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000181741 ENST00000449115 0.058±0.00 0.181±0.00 N/A N/A N/A 0.600±0.00 N/A N/A N/A 0.140±0.00 0.026±0.00 0.175±0.00 N/A N/A
ENSG00000201498 ENST00000364628 N/A 0.622±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.849±0.00 N/A N/A
ENSG00000207997 ENST00000385262 N/A N/A N/A 0.197±0.00 0.376±0.00 N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000231795 ENST00000418598 0.498±0.00 0.488±0.00 N/A 0.215±0.00 0.608±0.00 N/A 0.137±0.00 N/A 0.185±0.00 N/A N/A N/A N/A 0.064±0.00
ENSG00000234933 ENST00000456658 0.062±0.00 N/A N/A N/A 0.450±0.31 N/A 0.159±0.00 N/A N/A N/A N/A 0.059±0.00 N/A N/A
ENSG00000236388 ENST00000454205 N/A 0.391±0.00 N/A 0.060±0.00 0.324±0.02 N/A 0.154±0.00 N/A N/A 0.157±0.00 0.378±0.00 1.396±0.00 0.114±0.00 N/A
ENSG00000272945 ENST00000609218 0.182±0.00 0.267±0.00 0.786±0.00 0.200±0.00 0.107±0.00 0.147±0.00 0.197±0.00 0.479±0.00 0.256±0.00 0.048±0.00 0.209±0.00 0.579±0.57 0.134±0.00 0.216±0.08
ENSG00000277558 ENST00000618799 0.482±0.00 0.027±0.00 N/A 0.341±0.00 N/A 1.418±0.00 0.027±0.00 0.027±0.00 N/A 0.181±0.00 N/A 0.212±0.06 0.376±0.00 0.549±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027597 ENSMUST00000054607 11.738±4.31 16.150±1.99 9.302±1.71 12.492±7.91 9.906±2.12 45.329±2.92 5.197±1.21 73.357±7.30 236.886±182.33 7.435±0.94 8.735±1.37 28.781±10.76 24.193±23.55 4.370±3.05
ENSMUST00000137242 N/A N/A N/A 14.441±0.00 N/A N/A N/A N/A N/A N/A N/A 54.764±0.00 29.648±14.86 3.968±0.00
ENSMUST00000146367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027598 ENSMUST00000029126 3.692±1.46 1.549±1.16 6.033±2.81 6.499±0.53 2.135±0.47 4.049±1.38 2.762±0.89 5.748±2.39 4.242±1.56 5.510±1.90 3.475±0.32 5.819±3.76 6.755±2.46 2.628±0.68
ENSMUST00000109685 N/A 0.909±0.00 1.160±0.00 1.794±0.47 N/A N/A N/A N/A 0.760±0.12 N/A 0.791±0.21 1.274±0.43 2.109±1.07 0.873±0.40
ENSMUST00000123497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.078±0.00 N/A N/A
ENSMUST00000142147 N/A N/A N/A 7.774±0.00 N/A N/A N/A N/A N/A N/A N/A 11.007±0.00 9.395±4.05 N/A
ENSMUST00000155360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.904±0.00 N/A
ENSMUSG00000082596 ENSMUST00000119431 0.142±0.03 0.309±0.16 0.048±0.00 0.238±0.11 0.104±0.05 0.267±0.00 0.114±0.00 0.215±0.13 0.168±0.11 0.192±0.04 0.118±0.00 0.453±0.35 0.140±0.02 0.078±0.03
ENSMUSG00000087254 ENSMUST00000142569 N/A N/A N/A N/A N/A N/A N/A 0.073±0.01 0.062±0.04 N/A N/A 0.016±0.00 0.014±0.01 0.066±0.04

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