C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5 pseudogene 34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426545 RPL5P34-001 ENSG00000234009 9606 - 22:42776406-42777296 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000426545
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000426545 0.131±0.00 0.242±0.00 0.124±0.00 0.129±0.02 0.363±0.00 0.014±0.00 0.112±0.06 0.137±0.00 0.072±0.00 0.041±0.00 0.366±0.24 0.035±0.01 0.161±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040L CIL_00040L_0001 CGP 22:42692121-42858106

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 1147
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 1147
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 1147
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 1092
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 1081
ENSMUST00000121088 Gm11307-001 processed_pseudogene Mus_musculus 0 811
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 809
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 686
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000140659 Rpl5-005 retained_intron Mus_musculus 0 466
ENSDART00000127695 rpl5b-001 protein_coding Danio_rerio 0 453
ENSMUST00000121897 Gm15877-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000118025 Gm15766-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 0 267
ENSMUST00000151767 Rpl5-006 retained_intron Mus_musculus 0 252

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