C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004FN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136869-ENSG00000078725 CGP 9606 9:117704332-119369467
GeneTranscriptPositionBiotype
ENSG00000078725 (BRINP1)
bone morphogenetic protein/retinoic acid inducible neural-specific 1 		ENST00000265922 (BRINP1-001) 119166630-119369467 protein_coding
ENST00000373964 (BRINP1-002) 119213620-119369425 protein_coding
ENST00000482797 (BRINP1-003) 119153458-119208886 processed_transcript
ENSG00000136869 (TLR4)
toll-like receptor 4 		ENST00000355622 (TLR4-001) 117704372-117716871 protein_coding
ENST00000394487 (TLR4-002) 117704332-117715775 protein_coding
ENST00000472304 (TLR4-003) 117704389-117714952 processed_transcript
ENST00000490685 (TLR4-004) 117708197-117708979 processed_transcript
ENSG00000225050 (RP11-349E4.1)
 ENST00000450292 (RP11-349E4.1-001) 118687752-118705960 lincRNA
ENSG00000228512 (RP11-281A20.2)
 ENST00000421509 (RP11-281A20.2-001) 117783448-117868071 lincRNA
ENSG00000231901 (RP11-281A20.1)
 ENST00000449730 (RP11-281A20.1-001) 117840322-117897256 lincRNA
ENSG00000234782 (TPT1P9)
tumor protein, translationally-controlled 1 pseudogene 9 		ENST00000413759 (TPT1P9-001) 118082869-118083382 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004FN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039005-ENSMUSG00000028351 CGP 10090 4:66827584-68954397
GeneTranscriptPositionBiotype
ENSMUSG00000028351 (Brinp1)
bone morphogenic protein/retinoic acid inducible neural specific 1 		ENSMUST00000030036 (Brinp1-001) 68761514-68954397 protein_coding
ENSMUST00000140572 (Brinp1-003) 68826581-68829358 processed_transcript
ENSMUST00000156773 (Brinp1-002) 68795954-68841407 processed_transcript
ENSMUSG00000039005 (Tlr4)
toll-like receptor 4 		ENSMUST00000048096 (Tlr4-001) 66827584-66842800 protein_coding
ENSMUST00000107365 (Tlr4-004) 66827613-66930284 protein_coding
ENSMUST00000143580 (Tlr4-002) 66827619-66839429 processed_transcript
ENSMUST00000147008 (Tlr4-003) 66828202-66839618 processed_transcript
ENSMUSG00000081231 (Tcp1-ps1)
t-complex protein 1, pseudogene 1 		ENSMUST00000120941 (Tcp1-ps1-001) 68301246-68303290 processed_pseudogene
ENSMUSG00000083087 (Gm11249)
predicted gene 11249 		ENSMUST00000117071 (Gm11249-001) 67930881-67931739 processed_pseudogene
ENSMUSG00000086364 (Gm11751)
predicted gene 11751 		ENSMUST00000126187 (Gm11751-001) 68023031-68137113 lincRNA
ENSMUSG00000086790 (Gm12911)
predicted gene 12911 		ENSMUST00000140639 (Gm12911-001) 68312657-68321961 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004FN_0001ENSG00000078725ENST00000265922ENST00000373964ENST00000482797ENSG00000136869ENST00000355622ENST00000394487ENST00000472304ENST00000490685ENSG00000225050ENST00000450292ENSG00000228512ENST00000421509ENSG00000231901ENST00000449730ENSG00000234782ENST00000413759CIL_0004FN_0002ENSMUSG00000028351ENSMUST00000030036ENSMUST00000140572ENSMUST00000156773ENSMUSG00000039005ENSMUST00000048096ENSMUST00000107365ENSMUST00000143580ENSMUST00000147008ENSMUSG00000081231ENSMUST00000120941ENSMUSG00000083087ENSMUST00000117071ENSMUSG00000086364ENSMUST00000126187ENSMUSG00000086790ENSMUST00000140639
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004FN_0001ENSG00000078725ENST00000265922ENST00000373964ENST00000482797ENSG00000136869ENST00000355622ENST00000394487ENST00000472304ENSG00000225050ENST00000450292ENSG00000228512ENST00000421509ENSG00000231901ENST00000449730ENSG00000234782ENST00000413759CIL_0004FN_0002ENSMUSG00000028351ENSMUST00000030036ENSMUST00000140572ENSMUST00000156773ENSMUSG00000039005ENSMUST00000048096ENSMUST00000107365ENSMUST00000143580ENSMUST00000147008ENSMUSG00000081231ENSMUST00000120941ENSMUSG00000083087ENSMUST00000117071ENSMUSG00000086364ENSMUST00000126187ENSMUSG00000086790ENSMUST00000140639
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078725 ENST00000265922 N/A 0.265±0.00 0.157±0.00 23.429±1.06 0.342±0.00 0.152±0.00 0.126±0.00 0.202±0.17 0.211±0.00 0.361±0.15 0.061±0.00 0.078±0.03 0.036±0.01 0.677±0.41
ENST00000373964 0.053±0.00 N/A 0.507±0.00 N/A N/A N/A 0.018±0.00 0.114±0.00 N/A N/A N/A N/A N/A N/A
ENST00000482797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A
ENSG00000136869 ENST00000355622 12.873±0.00 N/A 0.969±0.00 0.968±0.19 1.818±0.21 0.796±0.19 0.876±0.58 2.226±0.76 0.747±0.40 2.392±0.54 N/A 0.495±0.03 2.678±0.63 N/A
ENST00000394487 N/A N/A N/A N/A N/A N/A 0.670±0.00 0.664±0.00 N/A N/A 0.431±0.00 1.193±0.00 N/A 0.060±0.00
ENST00000472304 N/A N/A 0.715±0.00 1.986±0.00 5.194±0.00 1.822±0.00 0.979±0.00 0.752±0.00 3.337±0.00 1.872±0.00 2.351±0.00 1.881±0.00 N/A N/A
ENST00000490685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225050 ENST00000450292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.889±0.00
ENSG00000228512 ENST00000421509 0.053±0.00 N/A N/A 0.197±0.00 N/A 0.076±0.00 N/A 0.121±0.00 N/A 0.179±0.00 N/A 0.159±0.06 0.083±0.03 0.084±0.06
ENSG00000231901 ENST00000449730 N/A N/A N/A 0.421±0.00 N/A N/A N/A 0.080±0.00 0.072±0.00 0.459±0.00 N/A 0.039±0.01 0.162±0.00 0.116±0.00
ENSG00000234782 ENST00000413759 0.837±0.00 1.484±0.00 N/A 0.321±0.00 0.322±0.26 0.896±0.00 0.654±0.00 0.886±0.00 0.347±0.00 1.145±0.00 4.607±0.00 0.392±0.31 0.350±0.11 0.417±0.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028351 ENSMUST00000030036 0.114±0.03 0.305±0.06 0.422±0.07 23.773±20.67 0.095±0.05 0.033±0.01 0.068±0.04 0.099±0.04 0.147±0.06 0.575±0.23 0.018±0.00 0.142±0.06 0.096±0.06 0.128±0.03
ENSMUST00000140572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00
ENSMUST00000156773 N/A N/A N/A N/A N/A 0.041±0.03 N/A N/A N/A N/A N/A N/A 0.014±0.00 0.027±0.00
ENSMUSG00000039005 ENSMUST00000048096 3.179±0.35 0.402±0.15 1.393±0.05 0.097±0.00 2.298±0.31 1.571±0.34 1.013±0.15 0.756±0.18 0.313±0.15 2.732±0.85 0.240±0.09 0.999±0.38 0.293±0.16 0.058±0.03
ENSMUST00000107365 N/A N/A N/A N/A N/A N/A 0.390±0.08 N/A 0.072±0.00 N/A N/A 0.492±0.10 N/A N/A
ENSMUST00000143580 N/A 0.770±0.14 N/A N/A N/A 1.042±0.00 N/A 1.044±0.00 0.392±0.19 N/A N/A 1.294±0.36 N/A 0.158±0.07
ENSMUST00000147008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.679±0.00 N/A
ENSMUSG00000081231 ENSMUST00000120941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.08
ENSMUSG00000083087 ENSMUST00000117071 2.433±0.67 0.433±0.25 4.452±2.55 4.195±2.93 1.283±0.49 0.996±0.38 1.163±0.14 1.170±0.46 8.863±10.64 0.629±0.36 0.105±0.03 1.107±0.73 1.115±1.59 0.485±0.07
ENSMUSG00000086364 ENSMUST00000126187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.472±0.00 N/A N/A
ENSMUSG00000086790 ENSMUST00000140639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.975±0.59

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