C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198959-ENSG00000149633 CGP 9606 20:38127387-38260772
GeneTranscriptPositionBiotype
ENSG00000101413 (RPRD1B)
regulation of nuclear pre-mRNA domain containing 1B 		ENST00000373433 (RPRD1B-001) 38033546-38092366 protein_coding
ENST00000449186 (RPRD1B-004) 38049753-38089839 protein_coding
ENST00000462548 (RPRD1B-003) 38033725-38091237 nonsense_mediated_decay
ENST00000471511 (RPRD1B-005) 38083896-38090259 processed_transcript
ENST00000484683 (RPRD1B-006) 38085376-38090008 processed_transcript
ENST00000495457 (RPRD1B-002) 38033832-38059425 nonsense_mediated_decay
ENST00000614670 (RPRD1B-009) 38066082-38127780 protein_coding
ENST00000618318 (RPRD1B-008) 38065878-38125081 processed_transcript
ENST00000622494 (RPRD1B-007) 38066181-38070617 protein_coding
ENSG00000101425 (BPI)
bactericidal/permeability-increasing protein 		ENST00000262865 (BPI-002) 38304123-38337505 protein_coding
ENST00000417318 (BPI-001) 38317649-38337325 protein_coding
ENST00000418004 (BPI-006) 38260149-38304332 protein_coding
ENST00000451435 (BPI-008) 38260175-38293892 protein_coding
ENST00000479646 (BPI-007) 38260206-38288947 processed_transcript
ENST00000489039 (BPI-005) 38319786-38321808 processed_transcript
ENST00000489102 (BPI-004) 38317672-38335641 processed_transcript
ENST00000490381 (BPI-003) 38335473-38337261 processed_transcript
ENSG00000149633 (KIAA1755)
KIAA1755 		ENST00000279024 (KIAA1755-001) 38210488-38260772 protein_coding
ENST00000435901 (KIAA1755-006) 38217253-38227219 protein_coding
ENST00000460881 (KIAA1755-004) 38212472-38218183 retained_intron
ENST00000484362 (KIAA1755-003) 38212472-38223144 retained_intron
ENST00000487506 (KIAA1755-002) 38212476-38218105 retained_intron
ENST00000496900 (KIAA1755-005) 38225549-38260772 protein_coding
ENST00000611812 (KIAA1755-007) 38236806-38239599 protein_coding
ENSG00000198959 (TGM2)
transglutaminase 2 		ENST00000361475 (TGM2-002) 38127387-38165372 protein_coding
ENST00000373403 (TGM2-004) 38146734-38166508 protein_coding
ENST00000453095 (TGM2-003) 38151012-38166578 protein_coding
ENST00000468262 (TGM2-006) 38137950-38165282 retained_intron
ENST00000469269 (TGM2-007) 38128461-38133760 retained_intron
ENST00000474777 (TGM2-001) 38145350-38165259 retained_intron
ENSG00000277829 (RP5-1054A22.4)
 ENST00000620019 (RP5-1054A22.4-001) 38233251-38233799 sense_intronic
CIL_0004NZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037820-ENSMUSG00000037813 CGP 10090 2:158116402-158229222
GeneTranscriptPositionBiotype
ENSMUSG00000027651 (Rprd1b)
regulation of nuclear pre-mRNA domain containing 1B 		ENSMUST00000029180 (Rprd1b-004) 158028721-158078207 protein_coding
ENSMUST00000103123 (Rprd1b-001) 158028497-158078207 protein_coding
ENSMUST00000109518 (Rprd1b-002) 158028701-158078207 protein_coding
ENSMUST00000109519 (Rprd1b-005) 158028508-158048710 retained_intron
ENSMUST00000128206 (Rprd1b-006) 158043423-158075067 protein_coding
ENSMUST00000135603 (Rprd1b-007) 158047959-158070510 protein_coding
ENSMUST00000152452 (Rprd1b-008) 158028799-158132297 protein_coding
ENSMUST00000156552 (Rprd1b-003) 158028692-158078207 processed_transcript
ENSMUSG00000037813 (D630003M21Rik)
RIKEN cDNA D630003M21 gene 		ENSMUST00000046944 (D630003M21Rik-001) 158195751-158229222 protein_coding
ENSMUST00000103121 (D630003M21Rik-002) 158182533-158229222 protein_coding
ENSMUST00000169335 (D630003M21Rik-201) 158186158-158229222 protein_coding
ENSMUSG00000037820 (Tgm2)
transglutaminase 2, C polypeptide 		ENSMUST00000103122 (Tgm2-001) 158116402-158146436 protein_coding
ENSMUST00000140923 (Tgm2-003) 158130380-158146366 retained_intron
ENSMUST00000152690 (Tgm2-002) 158134322-158139736 processed_transcript
ENSMUST00000174718 (Tgm2-004) 158127345-158146393 nonsense_mediated_decay
ENSMUSG00000078957 (1700060C20Rik)
RIKEN cDNA 1700060C20 gene 		ENSMUST00000109506 (1700060C20Rik-001) 158192008-158195749 antisense
ENSMUSG00000092283 (Gm20412)
predicted gene 20412 		ENSMUST00000173249 (Gm20412-001) 158117154-158117905 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NZ_0001ENSG00000101413ENST00000373433ENST00000449186ENST00000462548ENST00000471511ENST00000484683ENST00000495457ENST00000614670ENST00000618318ENST00000622494ENSG00000101425ENST00000262865ENST00000417318ENST00000418004ENST00000451435ENST00000479646ENST00000489039ENST00000489102ENST00000490381ENSG00000149633ENST00000279024ENST00000435901ENST00000460881ENST00000484362ENST00000487506ENST00000496900ENST00000611812ENSG00000198959ENST00000361475ENST00000373403ENST00000453095ENST00000468262ENST00000469269ENST00000474777ENSG00000277829ENST00000620019CIL_0004NZ_0002ENSMUSG00000027651ENSMUST00000029180ENSMUST00000103123ENSMUST00000109518ENSMUST00000109519ENSMUST00000128206ENSMUST00000135603ENSMUST00000152452ENSMUST00000156552ENSMUSG00000037813ENSMUST00000046944ENSMUST00000103121ENSMUST00000169335ENSMUSG00000037820ENSMUST00000103122ENSMUST00000140923ENSMUST00000152690ENSMUST00000174718ENSMUSG00000078957ENSMUST00000109506ENSMUSG00000092283ENSMUST00000173249
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NZ_0001ENSG00000101413ENST00000373433ENST00000462548ENSG00000101425ENST00000262865ENST00000417318ENST00000418004ENST00000479646ENST00000489102ENSG00000149633ENST00000279024ENST00000435901ENST00000460881ENST00000484362ENST00000487506ENST00000496900ENSG00000198959ENST00000361475ENST00000468262ENST00000469269ENSG00000277829ENST00000620019CIL_0004NZ_0002ENSMUSG00000027651ENSMUST00000029180ENSMUST00000103123ENSMUST00000109518ENSMUST00000128206ENSMUST00000156552ENSMUSG00000037813ENSMUST00000046944ENSMUST00000103121ENSMUST00000169335ENSMUSG00000037820ENSMUST00000103122ENSMUST00000174718ENSMUSG00000078957ENSMUST00000109506ENSMUSG00000092283ENSMUST00000173249
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101413 ENST00000373433 6.370±0.00 N/A 1.883±0.00 1.395±0.00 3.999±0.03 3.203±2.08 2.197±0.00 N/A 3.017±0.00 N/A 4.567±0.00 7.248±2.68 N/A 6.563±0.24
ENST00000449186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462548 N/A N/A N/A 1.555±0.00 N/A N/A N/A N/A N/A N/A 5.226±0.00 N/A N/A N/A
ENST00000471511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101425 ENST00000262865 6.583±0.00 N/A 0.282±0.00 N/A 0.177±0.00 0.146±0.00 0.017±0.00 0.430±0.00 N/A 5.432±0.00 N/A 0.183±0.06 0.027±0.00 1.158±0.00
ENST00000417318 N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 3.360±0.00 N/A N/A 0.605±0.00 4.916±0.00
ENST00000418004 N/A N/A N/A 0.189±0.00 N/A N/A N/A 0.233±0.00 1.310±0.00 N/A N/A 0.960±0.00 N/A N/A
ENST00000451435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479646 N/A 0.345±0.00 N/A 0.210±0.00 N/A 0.271±0.00 N/A N/A 0.212±0.00 N/A N/A 2.842±0.29 N/A N/A
ENST00000489039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489102 N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A 2.568±0.00
ENST00000490381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000149633 ENST00000279024 0.065±0.00 0.160±0.00 N/A 0.938±0.00 N/A 0.288±0.00 0.086±0.00 N/A N/A N/A 0.005±0.00 0.725±0.44 0.038±0.01 N/A
ENST00000435901 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.211±0.00 N/A 0.584±0.00 N/A 0.804±0.00
ENST00000460881 N/A 0.429±0.00 N/A 1.697±0.00 N/A 0.566±0.00 0.158±0.00 1.089±0.00 N/A N/A N/A 0.969±0.00 N/A 0.262±0.00
ENST00000484362 N/A 0.551±0.00 N/A 1.728±1.48 0.239±0.00 N/A N/A 0.674±0.00 0.383±0.00 N/A N/A 1.295±0.85 N/A 0.248±0.00
ENST00000487506 0.192±0.00 0.799±0.00 N/A N/A N/A 0.601±0.41 N/A 0.455±0.00 0.109±0.00 0.433±0.28 0.035±0.00 0.965±0.67 0.132±0.06 0.602±0.28
ENST00000496900 0.161±0.00 1.007±0.00 N/A 2.245±0.00 0.498±0.00 0.543±0.13 0.100±0.00 1.153±0.00 0.219±0.00 0.448±0.13 0.110±0.00 1.101±0.63 0.055±0.02 1.512±0.00
ENST00000611812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198959 ENST00000361475 N/A N/A 2.829±0.00 0.765±0.00 5.964±0.00 1.176±0.00 N/A N/A 9.100±0.00 8.962±0.00 N/A 5.246±0.57 157.247±73.44 N/A
ENST00000373403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468262 N/A N/A 2.339±0.00 1.293±0.00 8.799±0.00 2.753±0.00 10.716±0.00 7.930±0.00 17.498±0.00 23.704±0.00 N/A 22.753±12.77 303.815±0.00 6.916±0.00
ENST00000469269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.513±0.00 215.327±0.00 N/A
ENST00000474777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000277829 ENST00000620019 0.123±0.00 0.174±0.00 N/A 0.890±0.35 0.348±0.18 0.381±0.11 0.172±0.15 0.563±0.00 0.297±0.00 1.072±0.00 N/A 0.797±0.28 0.096±0.00 0.209±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027651 ENSMUST00000029180 N/A 15.398±2.59 N/A 1.793±0.10 N/A N/A N/A N/A 10.881±0.00 N/A 5.228±0.86 5.281±0.51 N/A 0.277±0.00
ENSMUST00000103123 N/A N/A N/A 5.035±4.06 N/A 15.324±0.84 N/A N/A 10.298±3.07 N/A 4.675±0.81 N/A N/A 3.640±0.65
ENSMUST00000109518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.102±0.06
ENSMUST00000109519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128206 N/A N/A N/A 6.384±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.906±0.00
ENSMUST00000135603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.018±0.00 N/A N/A 0.316±0.00
ENSMUSG00000037813 ENSMUST00000046944 1.603±1.02 1.599±0.70 1.033±0.05 0.977±0.38 0.977±0.38 1.447±0.29 2.175±0.59 0.836±0.17 0.206±0.09 0.772±0.15 0.675±0.15 2.129±0.68 0.195±0.11 0.952±0.48
ENSMUST00000103121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A
ENSMUST00000169335 N/A 0.168±0.00 N/A 0.618±0.00 N/A N/A N/A 0.307±0.00 0.093±0.00 N/A N/A 0.437±0.01 0.057±0.00 N/A
ENSMUSG00000037820 ENSMUST00000103122 121.524±38.54 29.302±7.83 92.525±2.32 4.010±0.47 126.614±23.53 47.484±3.84 60.873±5.82 86.734±10.89 41.088±6.63 130.682±11.88 22.630±4.04 105.980±41.72 137.114±78.00 3.397±1.28
ENSMUST00000140923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174718 N/A N/A N/A N/A 138.997±1.10 N/A N/A N/A N/A 123.591±0.00 N/A 126.888±5.31 N/A N/A
ENSMUSG00000078957 ENSMUST00000109506 0.057±0.00 N/A N/A 0.098±0.03 0.053±0.00 0.152±0.05 0.078±0.03 0.057±0.01 N/A 0.061±0.00 N/A 0.192±0.04 0.059±0.05 18.314±2.87
ENSMUSG00000092283 ENSMUST00000173249 159.717±6.36 N/A 163.591±2.46 N/A N/A N/A 104.148±2.51 132.336±4.06 N/A N/A 43.809±4.05 87.258±2.94 290.946±121.78 N/A

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