C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004XR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196511-ENSG00000174469 CGP 9606 7:144451941-148420998
GeneTranscriptPositionBiotype
ENSG00000174469 (CNTNAP2)
contactin associated protein-like 2 		ENST00000361727 (CNTNAP2-001) 146116361-148420998 protein_coding
ENST00000455301 (CNTNAP2-002) 147638809-147977989 protein_coding
ENST00000463592 (CNTNAP2-003) 148339472-148420998 processed_transcript
ENST00000602734 (CNTNAP2-004) 148339472-148416684 processed_transcript
ENSG00000196511 (TPK1)
thiamin pyrophosphokinase 1 		ENST00000360057 (TPK1-001) 144451941-144836053 protein_coding
ENST00000378098 (TPK1-002) 144452582-144836053 nonsense_mediated_decay
ENST00000378099 (TPK1-201) 144451950-144836053 protein_coding
ENST00000481645 (TPK1-003) 144619181-144739477 retained_intron
ENST00000482940 (TPK1-004) 144451941-144738922 nonsense_mediated_decay
ENST00000489798 (TPK1-006) 144643544-144738924 nonsense_mediated_decay
ENST00000538212 (TPK1-014) 144451943-144724159 protein_coding
ENST00000546806 (TPK1-009) 144681740-144738891 processed_transcript
ENST00000547966 (TPK1-012) 144453428-144666702 processed_transcript
ENST00000548460 (TPK1-008) 144835131-144835999 processed_transcript
ENST00000548831 (TPK1-011) 144591137-144646114 processed_transcript
ENST00000551062 (TPK1-013) 144531110-144666718 processed_transcript
ENST00000552881 (TPK1-007) 144591424-144836395 protein_coding
ENSG00000199370 (U3)
Small nucleolar RNA U3 		ENST00000362500 (U3.1-201) 148389645-148389859 snoRNA
ENSG00000200673 (RN7SKP174)
RNA, 7SK small nuclear pseudogene 174 		ENST00000363803 (RN7SKP174-201) 144849755-144850084 misc_RNA
ENSG00000214035 (AC073310.4)
 ENST00000423226 (AC073310.4-001) 145009961-145010993 processed_pseudogene
ENSG00000225918 (RPL7P59)
ribosomal protein L7 pseudogene 59 		ENST00000447700 (RPL7P59-001) 145039999-145040941 processed_pseudogene
ENSG00000226592 (AC004911.2)
 ENST00000416316 (AC004911.2-001) 145269514-145270384 processed_pseudogene
ENSG00000226857 (DUTP3)
deoxyuridine triphosphatase pseudogene 3 		ENST00000450025 (DUTP3-001) 147146342-147146756 processed_pseudogene
ENSG00000230190 (AC005518.2)
 ENST00000448131 (AC005518.2-001) 147671711-147673143 sense_intronic
ENSG00000230746 (AC006007.1)
 ENST00000422084 (AC006007.1-001) 145675882-145681369 lincRNA
ENSG00000231839 (AC073055.2)
 ENST00000456901 (AC073055.2-001) 145583197-145584817 processed_pseudogene
ENSG00000232391 (RANP2)
RAN, member RAS oncogene family pseudogene 2 		ENST00000456833 (RANP2-001) 147167344-147167572 processed_pseudogene
ENSG00000236343 (EI24P4)
etoposide induced 2.4 pseudogene 4 		ENST00000423683 (EI24P4-001) 145005058-145006135 processed_pseudogene
ENSG00000236795 (AC006004.1)
 ENST00000434887 (AC006004.1-001) 147080934-147097609 antisense
ENSG00000243746 (EEF1A1P10)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 10 		ENST00000475365 (EEF1A1P10-001) 144647186-144648575 processed_pseudogene
ENSG00000274118 (Y_RNA)
Y RNA 		ENST00000620301 (Y_RNA.1-987) 146311720-146311822 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004XR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029735-ENSMUSG00000039419 CGP 10090 6:43345001-47301369
GeneTranscriptPositionBiotype
ENSMUSG00000029735 (Tpk1)
thiamine pyrophosphokinase 		ENSMUST00000067888 (Tpk1-001) 43345001-43666278 protein_coding
ENSMUST00000114643 (Tpk1-004) 43593043-43665881 processed_transcript
ENSMUST00000114644 (Tpk1-003) 43345274-43666175 protein_coding
ENSMUST00000149424 (Tpk1-005) 43346842-43476520 processed_transcript
ENSMUST00000150599 (Tpk1-002) 43591591-43666219 protein_coding
ENSMUSG00000039419 (Cntnap2)
contactin associated protein-like 2 		ENSMUST00000060839 (Cntnap2-002) 47244402-47299570 protein_coding
ENSMUST00000114641 (Cntnap2-001) 45060061-47301369 protein_coding
ENSMUST00000150737 (Cntnap2-003) 47045060-47095560 processed_transcript
ENSMUSG00000079575 (Rbpsuh-rs3)
recombining binding protein suppressor of hairless (Drosophila), related sequence 3 		ENSMUST00000182751 (Rbpsuh-rs3-001) 46529354-46530794 processed_pseudogene
ENSMUSG00000084325 (Gm15550)
predicted gene 15550 		ENSMUST00000120824 (Gm15550-001) 43373805-43374878 processed_pseudogene
ENSMUSG00000089061 (Gm22839)
predicted gene, 22839 		ENSMUST00000158436 (Gm22839-201) 46037776-46038079 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XR_0001ENSG00000174469ENST00000361727ENST00000455301ENST00000463592ENST00000602734ENSG00000196511ENST00000360057ENST00000378098ENST00000378099ENST00000481645ENST00000482940ENST00000538212ENST00000547966ENST00000548460ENST00000548831ENST00000552881ENSG00000199370ENST00000362500ENSG00000200673ENST00000363803ENSG00000214035ENST00000423226ENSG00000225918ENST00000447700ENSG00000226592ENST00000416316ENSG00000226857ENST00000450025ENSG00000230190ENST00000448131ENSG00000230746ENST00000422084ENSG00000231839ENST00000456901ENSG00000232391ENST00000456833ENSG00000236343ENST00000423683ENSG00000236795ENST00000434887ENSG00000243746ENST00000475365ENSG00000274118ENST00000620301CIL_0004XR_0002ENSMUSG00000029735ENSMUST00000067888ENSMUST00000114643ENSMUST00000114644ENSMUST00000149424ENSMUSG00000039419ENSMUST00000060839ENSMUST00000114641ENSMUST00000150737ENSMUSG00000079575ENSMUST00000182751ENSMUSG00000084325ENSMUST00000120824ENSMUSG00000089061ENSMUST00000158436
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174469 ENST00000361727 N/A N/A 0.021±0.00 7.693±3.37 0.026±0.00 0.064±0.00 0.092±0.06 N/A 0.089±0.00 N/A 0.039±0.00 0.407±0.11 N/A 0.109±0.04
ENST00000455301 N/A N/A N/A N/A N/A N/A 0.589±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000463592 0.016±0.00 0.473±0.00 N/A N/A N/A 0.175±0.05 N/A 0.451±0.40 0.110±0.00 0.054±0.00 0.009±0.00 2.013±0.95 0.802±0.34 0.616±0.00
ENST00000602734 N/A N/A 0.137±0.00 N/A 0.110±0.00 N/A N/A N/A N/A 0.030±0.00 N/A N/A 0.237±0.00 N/A
ENSG00000196511 ENST00000360057 1.312±0.00 2.012±0.00 N/A 0.433±0.00 0.647±0.00 0.499±0.00 0.691±0.00 1.377±0.00 1.039±0.20 1.232±0.50 N/A 0.797±0.52 1.376±0.63 N/A
ENST00000378098 N/A N/A 0.638±0.00 N/A 0.467±0.00 0.786±0.00 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000378099 0.522±0.00 0.426±0.00 N/A N/A N/A 0.368±0.00 N/A N/A N/A N/A 0.242±0.00 N/A 0.718±0.03 N/A
ENST00000481645 N/A N/A 0.159±0.00 N/A N/A 0.183±0.00 N/A N/A 0.248±0.00 N/A N/A 0.189±0.00 N/A N/A
ENST00000482940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.771±0.00
ENST00000489798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538212 N/A N/A N/A N/A 0.174±0.00 N/A N/A N/A 0.406±0.00 N/A N/A N/A N/A N/A
ENST00000546806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547966 N/A N/A N/A 0.694±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.235±0.00 2.943±0.00
ENST00000548460 N/A N/A N/A N/A N/A N/A N/A 2.290±0.00 N/A N/A 0.529±0.00 1.149±0.00 N/A N/A
ENST00000548831 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.316±0.00 N/A N/A N/A N/A
ENST00000551062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552881 N/A N/A 1.541±0.00 4.849±0.00 1.282±0.00 N/A 0.771±0.00 1.465±0.00 N/A 2.165±0.00 N/A N/A N/A N/A
ENSG00000199370 ENST00000362500 N/A 0.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.944±0.00 N/A 0.262±0.00
ENSG00000200673 ENST00000363803 N/A 0.106±0.00 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00
ENSG00000214035 ENST00000423226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.028±0.00
ENSG00000225918 ENST00000447700 0.095±0.00 0.025±0.00 N/A 0.037±0.00 0.048±0.00 0.113±0.00 0.011±0.00 0.050±0.00 0.011±0.00 0.012±0.00 0.098±0.00 0.049±0.00 N/A 0.082±0.04
ENSG00000226592 ENST00000416316 0.054±0.00 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A 0.186±0.00
ENSG00000226857 ENST00000450025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00
ENSG00000230190 ENST00000448131 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.01
ENSG00000230746 ENST00000422084 N/A 0.016±0.00 N/A N/A 0.229±0.00 0.315±0.05 0.462±0.43 N/A 0.323±0.00 N/A N/A 0.169±0.00 N/A 0.086±0.00
ENSG00000231839 ENST00000456901 N/A N/A N/A N/A N/A N/A 0.036±0.00 0.011±0.00 N/A N/A N/A N/A N/A 0.019±0.00
ENSG00000232391 ENST00000456833 N/A 0.078±0.00 N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A
ENSG00000236343 ENST00000423683 N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.125±0.00
ENSG00000236795 ENST00000434887 0.040±0.00 0.144±0.00 N/A 0.101±0.00 0.100±0.00 0.063±0.00 0.021±0.00 0.017±0.00 N/A 0.069±0.00 0.005±0.00 0.027±0.00 N/A 0.218±0.04
ENSG00000243746 ENST00000475365 0.734±0.00 0.770±0.00 0.041±0.00 0.276±0.00 0.454±0.32 0.486±0.10 0.127±0.08 0.270±0.23 0.136±0.02 0.275±0.18 0.429±0.00 0.121±0.08 0.069±0.05 0.279±0.12
ENSG00000274118 ENST00000620301 N/A N/A N/A 0.373±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029735 ENSMUST00000067888 1.581±0.26 3.452±1.61 3.089±0.74 0.770±0.43 1.209±0.38 2.194±0.80 0.558±0.19 13.929±1.17 2.950±0.99 2.186±0.81 0.281±0.05 1.883±1.12 2.304±2.12 0.493±0.24
ENSMUST00000114643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.045±0.00
ENSMUST00000114644 1.527±0.82 2.316±0.00 0.841±0.00 0.630±0.01 2.292±0.85 7.133±1.44 0.578±0.25 16.263±3.86 3.468±2.18 1.718±0.51 0.201±0.04 1.566±0.37 0.855±0.08 0.636±0.36
ENSMUST00000149424 N/A N/A N/A N/A N/A 7.477±0.00 N/A N/A 4.914±0.00 4.445±0.00 0.729±0.00 5.081±1.96 3.708±0.00 1.923±0.85
ENSMUST00000150599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039419 ENSMUST00000060839 0.905±0.62 0.453±0.11 12.040±2.40 21.068±10.45 0.280±0.18 0.100±0.03 N/A 0.072±0.04 0.429±0.28 N/A 5.067±0.72 0.778±0.37 0.180±0.18 6.409±2.60
ENSMUST00000114641 N/A 0.098±0.02 N/A 2.820±0.34 0.013±0.00 0.139±0.06 0.013±0.01 0.040±0.02 0.001±0.00 0.028±0.00 N/A 0.028±0.00 0.011±0.00 0.456±0.00
ENSMUST00000150737 0.198±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.832±0.00
ENSMUSG00000079575 ENSMUST00000182751 1.056±0.45 0.083±0.00 0.301±0.15 1.571±0.84 0.945±0.44 0.391±0.00 0.665±0.00 0.298±0.07 0.257±0.25 0.949±0.00 0.070±0.00 1.554±1.15 1.292±1.24 0.481±0.24
ENSMUSG00000084325 ENSMUST00000120824 0.078±0.03 0.082±0.00 0.045±0.01 0.041±0.02 0.111±0.05 0.067±0.00 N/A 0.034±0.00 0.023±0.02 0.058±0.00 N/A N/A 0.047±0.03 0.045±0.01
ENSMUSG00000089061 ENSMUST00000158436 N/A N/A N/A 0.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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