C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 29201
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189120 RP24-158I9.1-001 ENSMUSG00000099663 10090 + 18:12365799-12366229 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLungOvaryTestisENSMUST00000189120
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Lung Ovary Testis
ENSMUST00000189120 0.180±0.06 0.346±0.00 0.062±0.00 0.128±0.00 0.494±0.31 0.168±0.06 0.365±0.20 0.145±0.01 0.423±0.02 0.116±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AV CIL_0005AV_0002 CGP 18:12252362-12583013
CIL_0005WU CIL_0005WU_0002 CGP 18:12333819-12737050

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 401
ENST00000439114 AC114755.4-001 processed_pseudogene Homo_sapiens 0 195
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 329
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 385
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 387
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 337
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 398
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 337
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 244
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 387

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