C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23a pseudogene 77
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588044 RPL23AP77-001 ENSG00000267301 9606 - 18:23709825-23710287 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLungMuscleTestisENST00000588044
Transcript ID Heart Kidney Lung Muscle Testis
ENST00000588044 0.051±0.02 0.038±0.00 0.074±0.00 0.065±0.00 0.165±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AV CIL_0005AV_0001 CGP 18:23598926-23955066
CIL_0005WU CIL_0005WU_0001 CGP 18:23689443-24135610

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 514
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 508
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 496
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 494
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 477
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 379
ENSMUST00000177167 Gm20673-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000119619 Gm7219-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000119323 Gm11928-001 processed_pseudogene Mus_musculus 9.94922e-44 180

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