C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005BA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078747-ENSG00000125971 CGP 9606 20:34363235-34540958
GeneTranscriptPositionBiotype
ENSG00000078747 (ITCH)
itchy E3 ubiquitin protein ligase 		ENST00000262650 (ITCH-002) 34363312-34508035 protein_coding
ENST00000374864 (ITCH-001) 34363235-34511393 protein_coding
ENST00000461661 (ITCH-007) 34471501-34481182 processed_transcript
ENST00000479215 (ITCH-004) 34363295-34369543 processed_transcript
ENST00000483727 (ITCH-005) 34445361-34481176 processed_transcript
ENST00000486883 (ITCH-003) 34363241-34413879 processed_transcript
ENST00000535650 (ITCH-201) 34393768-34511392 protein_coding
ENST00000610336 (ITCH-202) 34393768-34511392 protein_coding
ENST00000621101 (ITCH-203) 34393768-34511392 protein_coding
ENSG00000181741 (FDX1P1)
ferredoxin 1 pseudogene 1 		ENST00000449115 (FDX1P1-001) 34475924-34476474 processed_pseudogene
ENSG00000201498 (Y_RNA)
Y RNA 		ENST00000364628 (Y_RNA.1-462) 34384165-34384265 misc_RNA
ENSG00000206582 (Y_RNA)
Y RNA 		ENST00000383855 (Y_RNA.1-585) 34526510-34526606 misc_RNA
ENSG00000207997 (MIR644A)
microRNA 644a 		ENST00000385262 (MIR644A-201) 34466325-34466418 miRNA
ENSG00000231795 (ITCH-IT1)
ITCH intronic transcript 1 (non-protein coding) 		ENST00000418598 (ITCH-IT1-001) 34450930-34454552 sense_intronic
ENSG00000234933 (CDC42P1)
cell division cycle 42 pseudogene 1 		ENST00000456658 (CDC42P1-001) 34402149-34402696 processed_pseudogene
ENSG00000236388 (ITCH-AS1)
ITCH antisense RNA 1 		ENST00000454205 (ITCH-AS1-001) 34441592-34442025 antisense
ENSG00000277558 (RP3-468O1.6)
 ENST00000618799 (RP3-468O1.6-001) 34476205-34476787 sense_intronic
CIL_0005BA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027598-ENSMUSG00000047459 CGP 10090 2:155133509-155250277
GeneTranscriptPositionBiotype
ENSMUSG00000027598 (Itch)
itchy, E3 ubiquitin protein ligase 		ENSMUST00000029126 (Itch-001) 155133509-155226855 protein_coding
ENSMUST00000109685 (Itch-002) 155133559-155226853 protein_coding
ENSMUST00000123497 (Itch-004) 155133561-155212594 retained_intron
ENSMUST00000126648 (Itch-007) 155133509-155139289 retained_intron
ENSMUST00000138468 (Itch-005) 155133524-155177147 retained_intron
ENSMUST00000142147 (Itch-003) 155133531-155202710 processed_transcript
ENSMUST00000155360 (Itch-006) 155133509-155174289 retained_intron
ENSMUSG00000047459 (Dynlrb1)
dynein light chain roadblock-type 1 		ENSMUST00000054912 (Dynlrb1-002) 155236533-155250272 processed_transcript
ENSMUST00000109682 (Dynlrb1-001) 155236535-155250277 protein_coding
ENSMUST00000135831 (Dynlrb1-004) 155236811-155250080 processed_transcript
ENSMUST00000150602 (Dynlrb1-003) 155236608-155250135 protein_coding
ENSMUSG00000082596 (Gm14227)
predicted gene 14227 		ENSMUST00000119431 (Gm14227-001) 155198632-155199260 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BA_0001ENSG00000078747ENST00000262650ENST00000374864ENST00000461661ENST00000479215ENST00000483727ENST00000486883ENST00000535650ENST00000610336ENST00000621101ENSG00000181741ENST00000449115ENSG00000201498ENST00000364628ENSG00000206582ENST00000383855ENSG00000207997ENST00000385262ENSG00000231795ENST00000418598ENSG00000234933ENST00000456658ENSG00000236388ENST00000454205ENSG00000277558ENST00000618799CIL_0005BA_0002ENSMUSG00000027598ENSMUST00000029126ENSMUST00000109685ENSMUST00000123497ENSMUST00000126648ENSMUST00000138468ENSMUST00000142147ENSMUST00000155360ENSMUSG00000047459ENSMUST00000054912ENSMUST00000109682ENSMUST00000135831ENSMUST00000150602ENSMUSG00000082596ENSMUST00000119431
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BA_0001ENSG00000078747ENST00000262650ENST00000374864ENST00000486883ENST00000535650ENST00000610336ENSG00000181741ENST00000449115ENSG00000201498ENST00000364628ENSG00000206582ENST00000383855ENSG00000207997ENST00000385262ENSG00000231795ENST00000418598ENSG00000234933ENST00000456658ENSG00000236388ENST00000454205ENSG00000277558ENST00000618799CIL_0005BA_0002ENSMUSG00000027598ENSMUST00000029126ENSMUST00000109685ENSMUST00000138468ENSMUST00000142147ENSMUST00000155360ENSMUSG00000047459ENSMUST00000054912ENSMUST00000109682ENSMUSG00000082596ENSMUST00000119431
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078747 ENST00000262650 2.696±0.00 N/A 2.822±0.00 2.658±0.09 7.589±0.00 9.205±0.00 2.064±0.60 4.691±0.00 5.925±0.00 5.876±0.00 2.013±0.00 4.501±1.36 3.706±0.00 10.594±3.26
ENST00000374864 4.047±0.00 N/A 2.077±0.00 2.945±0.00 3.928±2.41 2.022±0.00 0.905±0.20 6.923±0.00 2.431±0.20 N/A 0.419±0.00 2.300±1.04 1.916±0.51 3.603±0.00
ENST00000461661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.714±0.00 N/A N/A N/A
ENST00000535650 N/A 1.921±0.00 N/A 1.275±0.00 N/A N/A 1.039±0.00 N/A N/A N/A N/A 1.719±0.00 N/A 2.417±0.00
ENST00000610336 2.628±0.00 1.294±0.00 N/A N/A 3.662±0.00 2.380±0.75 3.756±0.00 N/A N/A N/A 6.849±0.00 4.853±1.28 2.326±0.81 2.778±1.71
ENST00000621101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000181741 ENST00000449115 0.058±0.00 0.181±0.00 N/A N/A N/A 0.600±0.00 N/A N/A N/A 0.140±0.00 0.026±0.00 0.175±0.00 N/A N/A
ENSG00000201498 ENST00000364628 N/A 0.622±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.849±0.00 N/A N/A
ENSG00000206582 ENST00000383855 N/A 1.201±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207997 ENST00000385262 N/A N/A N/A 0.197±0.00 0.376±0.00 N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000231795 ENST00000418598 0.498±0.00 0.488±0.00 N/A 0.215±0.00 0.608±0.00 N/A 0.137±0.00 N/A 0.185±0.00 N/A N/A N/A N/A 0.064±0.00
ENSG00000234933 ENST00000456658 0.062±0.00 N/A N/A N/A 0.450±0.31 N/A 0.159±0.00 N/A N/A N/A N/A 0.059±0.00 N/A N/A
ENSG00000236388 ENST00000454205 N/A 0.391±0.00 N/A 0.060±0.00 0.324±0.02 N/A 0.154±0.00 N/A N/A 0.157±0.00 0.378±0.00 1.396±0.00 0.114±0.00 N/A
ENSG00000277558 ENST00000618799 0.482±0.00 0.027±0.00 N/A 0.341±0.00 N/A 1.418±0.00 0.027±0.00 0.027±0.00 N/A 0.181±0.00 N/A 0.212±0.06 0.376±0.00 0.549±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027598 ENSMUST00000029126 3.692±1.46 1.549±1.16 6.033±2.81 6.499±0.53 2.135±0.47 4.049±1.38 2.762±0.89 5.748±2.39 4.242±1.56 5.510±1.90 3.475±0.32 5.819±3.76 6.755±2.46 2.628±0.68
ENSMUST00000109685 N/A 0.909±0.00 1.160±0.00 1.794±0.47 N/A N/A N/A N/A 0.760±0.12 N/A 0.791±0.21 1.274±0.43 2.109±1.07 0.873±0.40
ENSMUST00000123497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.078±0.00 N/A N/A
ENSMUST00000142147 N/A N/A N/A 7.774±0.00 N/A N/A N/A N/A N/A N/A N/A 11.007±0.00 9.395±4.05 N/A
ENSMUST00000155360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.904±0.00 N/A
ENSMUSG00000047459 ENSMUST00000054912 N/A 42.950±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.740±0.00 21.171±0.00 N/A
ENSMUST00000109682 190.135±60.20 134.208±11.60 223.080±37.00 218.160±121.63 127.465±12.42 103.785±8.26 158.659±3.14 159.623±5.46 116.749±33.16 114.997±3.28 48.733±2.72 110.765±26.60 91.767±57.03 22.482±10.11
ENSMUST00000135831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082596 ENSMUST00000119431 0.142±0.03 0.309±0.16 0.048±0.00 0.238±0.11 0.104±0.05 0.267±0.00 0.114±0.00 0.215±0.13 0.168±0.11 0.192±0.04 0.118±0.00 0.453±0.35 0.140±0.02 0.078±0.03

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