C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, S
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086828 Ptprs-002 ENSMUSG00000013236 10090 - 17:56412431-56462216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086828
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086828 15.127±7.70 12.182±0.38 90.411±39.89 8.762±5.77 7.636±1.50 4.256±2.51 3.744±0.65 1.698±1.30 11.055±1.00 1.355±0.45 21.775±5.11 1.902±0.43 3.145±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ON CIL_0005ON_0002 CGP 17:56326062-56476483
CIL_0005OM CIL_0005OM_0002 CGP 17:56412431-56512483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane
GO:0021510 IMP spinal cord development
GO:0021549 IMP cerebellum development
GO:0021766 IMP hippocampus development
GO:0021987 IMP cerebral cortex development
GO:0022038 IMP corpus callosum development
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083308 ptprsa-201 protein_coding Danio_rerio 0 1517
ENSDART00000145114 ptprsa-001 protein_coding Danio_rerio 0 1517
ENSDART00000050551 ptprsb-201 protein_coding Danio_rerio 0 1399
ENSDART00000026738 ptprfa-201 protein_coding Danio_rerio 0 1090
ENSDART00000142544 ptprfa-001 protein_coding Danio_rerio 0 1090
ENSDART00000092552 ptprga-201 protein_coding Danio_rerio 0.00000005 66
ENST00000262963 PTPRS-201 protein_coding Homo_sapiens 0 5044
ENST00000348075 PTPRS-202 protein_coding Homo_sapiens 0 3044
ENST00000353284 PTPRS-203 protein_coding Homo_sapiens 0 5049
ENST00000357368 PTPRS-204 protein_coding Homo_sapiens 0 1982
ENST00000359947 PTPRF-001 protein_coding Homo_sapiens 0 1568
ENST00000372407 PTPRF-005 protein_coding Homo_sapiens 0 1528
ENST00000412568 PTPRF-014 protein_coding Homo_sapiens 0 1528
ENST00000414879 PTPRF-006 protein_coding Homo_sapiens 0 1528
ENST00000429895 PTPRF-015 protein_coding Homo_sapiens 0 1568
ENST00000438120 PTPRF-002 protein_coding Homo_sapiens 0 1568
ENST00000477970 PTPRF-007 processed_transcript Homo_sapiens 0 1029
ENST00000496447 PTPRF-008 processed_transcript Homo_sapiens 0 1568
ENST00000587303 PTPRS-002 protein_coding Homo_sapiens 0 1982
ENST00000588012 PTPRS-003 protein_coding Homo_sapiens 0 3044
ENST00000588552 PTPRS-004 processed_transcript Homo_sapiens 0 3125
ENST00000589851 PTPRS-008 retained_intron Homo_sapiens 0 303
ENST00000590509 PTPRS-005 protein_coding Homo_sapiens 0 399
ENST00000592099 PTPRS-001 protein_coding Homo_sapiens 0 5066

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