C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, S
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067538 Ptprs-001 ENSMUSG00000013236 10090 - 17:56412433-56476483 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067538 33.575±27.64 75.683±26.65 54.246±7.56 106.294±12.06 12.779±5.13 10.239±2.61 7.137±3.83 3.894±1.57 2.407±1.78 21.047±3.16 1.449±0.60 46.228±24.62 2.352±1.48 7.202±3.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ON CIL_0005ON_0002 CGP 17:56326062-56476483
CIL_0005OM CIL_0005OM_0002 CGP 17:56412431-56512483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane
GO:0021510 IMP spinal cord development
GO:0021549 IMP cerebellum development
GO:0021766 IMP hippocampus development
GO:0021987 IMP cerebral cortex development
GO:0022038 IMP corpus callosum development
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083308 ptprsa-201 protein_coding Danio_rerio 0 1517
ENSDART00000145114 ptprsa-001 protein_coding Danio_rerio 0 1517
ENSDART00000050551 ptprsb-201 protein_coding Danio_rerio 0 1399
ENSDART00000026738 ptprfa-201 protein_coding Danio_rerio 0 1090
ENSDART00000142544 ptprfa-001 protein_coding Danio_rerio 0 1090
ENSDART00000092552 ptprga-201 protein_coding Danio_rerio 0.00000006 66
ENST00000262963 PTPRS-201 protein_coding Homo_sapiens 0 3022
ENST00000348075 PTPRS-202 protein_coding Homo_sapiens 0 6359
ENST00000353284 PTPRS-203 protein_coding Homo_sapiens 0 3044
ENST00000357368 PTPRS-204 protein_coding Homo_sapiens 0 4096
ENST00000359947 PTPRF-001 protein_coding Homo_sapiens 0 1568
ENST00000372407 PTPRF-005 protein_coding Homo_sapiens 0 1528
ENST00000412568 PTPRF-014 protein_coding Homo_sapiens 0 1528
ENST00000414879 PTPRF-006 protein_coding Homo_sapiens 0 1528
ENST00000429895 PTPRF-015 protein_coding Homo_sapiens 0 1568
ENST00000438120 PTPRF-002 protein_coding Homo_sapiens 0 1568
ENST00000477970 PTPRF-007 processed_transcript Homo_sapiens 0 1029
ENST00000496447 PTPRF-008 processed_transcript Homo_sapiens 0 1568
ENST00000587303 PTPRS-002 protein_coding Homo_sapiens 0 4098
ENST00000588012 PTPRS-003 protein_coding Homo_sapiens 0 6314
ENST00000588552 PTPRS-004 processed_transcript Homo_sapiens 0 2065
ENST00000589851 PTPRS-008 retained_intron Homo_sapiens 0 303
ENST00000590509 PTPRS-005 protein_coding Homo_sapiens 0 405
ENST00000592099 PTPRS-001 protein_coding Homo_sapiens 0 3044

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