C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2 pseudogene 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397318 RPS2P55-001 ENSG00000216866 9606 - X:40934982-40935864 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000397318
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000397318 0.140±0.00 0.329±0.00 0.035±0.00 0.131±0.00 0.323±0.00 0.028±0.00 0.109±0.00 0.030±0.00 1.197±0.00 0.255±0.17 0.142±0.06 0.105±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QE CIL_0005QE_0001 CGP X:40648306-41236579

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 985
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 985
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 981
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 968
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 952
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 950
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 928
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 924
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 874
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 869
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 867
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 808
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 797
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 776
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 723
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 723
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000119349 Gm11524-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 340
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 0 233
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 1e-36 158

Loading