C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005UP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000243335-ENSG00000154710 CGP 9606 7:66628881-66811464
GeneTranscriptPositionBiotype
ENSG00000226824 (RP4-756H11.3)
 ENST00000428557 (RP4-756H11.3-002) 66654586-66669855 sense_intronic
ENST00000439360 (RP4-756H11.3-001) 66654551-66669298 sense_intronic
ENST00000448096 (RP4-756H11.3-003) 66654538-66666299 sense_intronic
ENSG00000243335 (KCTD7)
potassium channel tetramerization domain containing 7 		ENST00000275532 (KCTD7-001) 66628881-66643051 protein_coding
ENST00000443322 (KCTD7-002) 66628943-66640565 protein_coding
ENST00000449064 (KCTD7-003) 66628958-66638929 protein_coding
ENST00000503687 (KCTD7-004) 66628958-66811187 nonsense_mediated_decay
ENSG00000271064 (RP11-792A8.3)
 ENST00000603786 (RP11-792A8.3-001) 66748838-66749077 processed_pseudogene
ENSG00000272831 (RP11-792A8.4)
 ENST00000607978 (RP11-792A8.4-001) 66739829-66740385 antisense
CIL_0005UP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034110-ENSMUSG00000025340 CGP 10090 5:130144861-130214342
GeneTranscriptPositionBiotype
ENSMUSG00000025340 (Rabgef1)
RAB guanine nucleotide exchange factor (GEF) 1 		ENSMUST00000026390 (Rabgef1-002) 130187161-130214337 protein_coding
ENSMUST00000119027 (Rabgef1-004) 130187161-130208752 protein_coding
ENSMUST00000119797 (Rabgef1-001) 130171798-130214342 protein_coding
ENSMUST00000125937 (Rabgef1-006) 130207053-130210991 retained_intron
ENSMUST00000143727 (Rabgef1-005) 130187220-130191321 retained_intron
ENSMUST00000143865 (Rabgef1-008) 130213166-130214050 nonsense_mediated_decay
ENSMUST00000147493 (Rabgef1-007) 130211381-130212975 retained_intron
ENSMUST00000148264 (Rabgef1-003) 130171824-130210442 protein_coding
ENSMUSG00000034110 (Kctd7)
potassium channel tetramerisation domain containing 7 		ENSMUST00000040616 (Kctd7-001) 130144861-130155806 protein_coding
ENSMUST00000144467 (Kctd7-003) 130145104-130152494 protein_coding
ENSMUST00000144878 (Kctd7-002) 130144924-130148170 processed_transcript
ENSMUSG00000080893 (Gm15920)
predicted gene 15920 		ENSMUST00000118998 (Gm15920-001) 130188395-130188796 processed_pseudogene
ENSMUSG00000094092 (Gm15921)
predicted gene 15921 		ENSMUST00000119542 (Gm15921-001) 130208080-130208562 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UP_0001ENSG00000226824ENST00000428557ENST00000439360ENST00000448096ENSG00000243335ENST00000275532ENST00000443322ENST00000449064ENST00000503687ENSG00000271064ENST00000603786ENSG00000272831ENST00000607978CIL_0005UP_0002ENSMUSG00000025340ENSMUST00000026390ENSMUST00000119027ENSMUST00000119797ENSMUST00000125937ENSMUST00000143727ENSMUST00000143865ENSMUST00000147493ENSMUST00000148264ENSMUSG00000034110ENSMUST00000040616ENSMUST00000144467ENSMUST00000144878ENSMUSG00000080893ENSMUST00000118998ENSMUSG00000094092ENSMUST00000119542
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UP_0001ENSG00000226824ENST00000428557ENST00000439360ENST00000448096ENSG00000243335ENST00000275532ENSG00000271064ENST00000603786ENSG00000272831ENST00000607978CIL_0005UP_0002ENSMUSG00000025340ENSMUST00000026390ENSMUST00000119797ENSMUST00000147493ENSMUST00000148264ENSMUSG00000034110ENSMUST00000040616ENSMUST00000144467ENSMUST00000144878ENSMUSG00000080893ENSMUST00000118998ENSMUSG00000094092ENSMUST00000119542
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000226824 ENST00000428557 N/A N/A N/A 0.786±0.00 N/A N/A 0.086±0.00 N/A N/A N/A N/A 1.031±0.00 0.528±0.00 N/A
ENST00000439360 0.844±0.00 N/A N/A 0.235±0.00 1.530±0.73 N/A 0.509±0.00 N/A 0.195±0.00 0.202±0.00 1.514±0.00 1.086±0.56 0.287±0.09 5.107±2.06
ENST00000448096 N/A 1.140±0.00 N/A 2.851±0.00 1.669±0.00 0.159±0.00 0.160±0.00 N/A 0.228±0.00 0.256±0.00 0.439±0.00 0.434±0.26 0.112±0.00 N/A
ENSG00000243335 ENST00000275532 1.473±0.00 3.076±0.00 N/A 3.592±0.79 1.542±0.54 1.982±0.00 0.733±0.15 0.515±0.00 2.241±0.00 1.927±0.25 0.970±0.00 5.259±2.49 2.089±0.02 6.655±0.31
ENST00000443322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271064 ENST00000603786 0.393±0.00 1.173±0.00 5.767±0.00 N/A 3.281±0.00 N/A N/A N/A 2.754±0.00 N/A N/A 0.257±0.00 N/A 0.076±0.00
ENSG00000272831 ENST00000607978 N/A N/A N/A N/A 14.172±0.00 20.239±0.00 N/A 4.560±0.00 5.861±0.00 11.134±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025340 ENSMUST00000026390 N/A 4.992±0.42 N/A N/A 4.294±1.94 5.219±0.27 N/A N/A 0.771±0.00 N/A N/A 4.872±1.05 N/A N/A
ENSMUST00000119027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119797 3.467±0.26 1.647±0.00 14.219±3.44 3.720±1.00 4.016±1.85 5.812±0.16 3.680±1.51 4.338±0.97 6.634±2.45 9.066±1.66 16.913±3.44 3.698±1.16 7.076±3.12 2.402±0.51
ENSMUST00000125937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147493 3.592±0.91 9.888±2.37 N/A 3.418±0.00 5.708±1.06 7.768±1.35 2.966±0.00 3.320±0.00 2.267±0.31 5.478±1.07 N/A 7.371±2.56 N/A 1.340±0.09
ENSMUST00000148264 N/A N/A N/A 8.469±0.00 N/A N/A N/A N/A N/A N/A N/A 15.748±0.00 14.097±4.84 1.248±0.00
ENSMUSG00000034110 ENSMUST00000040616 2.138±0.20 7.562±0.80 1.618±0.25 3.080±1.14 2.156±0.41 2.317±0.23 0.778±0.04 1.148±0.24 2.346±0.84 3.735±0.29 0.820±0.20 3.998±1.63 0.638±0.23 4.967±2.67
ENSMUST00000144467 N/A N/A N/A N/A N/A 2.099±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144878 N/A 9.540±2.46 N/A N/A 3.190±0.20 2.781±0.84 N/A 1.469±0.00 N/A N/A N/A 5.231±0.86 N/A N/A
ENSMUSG00000080893 ENSMUST00000118998 20.106±4.17 5.361±1.25 1.211±0.61 2.008±0.69 8.869±2.50 6.013±2.13 35.440±2.58 25.214±7.91 4.781±4.62 5.503±2.55 1.115±0.83 8.209±6.43 11.929±15.48 15.227±5.17
ENSMUSG00000094092 ENSMUST00000119542 0.467±0.00 0.756±0.06 0.871±0.00 0.540±0.00 0.717±0.18 1.066±0.00 0.170±0.05 0.205±0.07 0.322±0.10 0.849±0.28 0.086±0.02 1.073±0.58 0.292±0.17 0.176±0.06

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