C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141458-ENSG00000154065 CGP 9606 18:23506184-23662885
GeneTranscriptPositionBiotype
ENSG00000141452 (C18orf8)
chromosome 18 open reading frame 8 		ENST00000269221 (C18orf8-001) 23503509-23531782 protein_coding
ENST00000587153 (C18orf8-007) 23503519-23504722 retained_intron
ENST00000587690 (C18orf8-005) 23503520-23515886 nonsense_mediated_decay
ENST00000589215 (C18orf8-003) 23503513-23531778 nonsense_mediated_decay
ENST00000589409 (C18orf8-010) 23529966-23531779 retained_intron
ENST00000589860 (C18orf8-008) 23503531-23519166 nonsense_mediated_decay
ENST00000590387 (C18orf8-009) 23527874-23529482 retained_intron
ENST00000590868 (C18orf8-004) 23503519-23531776 protein_coding
ENST00000590870 (C18orf8-002) 23503533-23531743 nonsense_mediated_decay
ENST00000591367 (C18orf8-013) 23529338-23531782 processed_transcript
ENST00000592119 (C18orf8-006) 23503535-23509677 protein_coding
ENST00000592682 (C18orf8-011) 23529965-23530536 retained_intron
ENST00000593081 (C18orf8-012) 23529596-23531782 retained_intron
ENST00000615148 (C18orf8-201) 23503470-23531807 protein_coding
ENSG00000141458 (NPC1)
Niemann-Pick disease, type C1 		ENST00000269228 (NPC1-001) 23531437-23586898 protein_coding
ENST00000540608 (NPC1-004) 23539730-23586487 processed_transcript
ENST00000586150 (NPC1-012) 23529293-23535700 protein_coding
ENST00000586718 (NPC1-009) 23539823-23541372 retained_intron
ENST00000587163 (NPC1-011) 23533202-23534560 retained_intron
ENST00000587223 (NPC1-005) 23573452-23576947 processed_transcript
ENST00000588867 (NPC1-010) 23531722-23535700 retained_intron
ENST00000590301 (NPC1-006) 23551546-23554985 retained_intron
ENST00000590723 (NPC1-014) 23522315-23533517 protein_coding
ENST00000591051 (NPC1-003) 23531946-23560342 protein_coding
ENST00000591075 (NPC1-007) 23536742-23539898 retained_intron
ENST00000591107 (NPC1-002) 23506184-23535622 protein_coding
ENST00000591955 (NPC1-008) 23536700-23538925 retained_intron
ENST00000593280 (NPC1-013) 23528207-23533440 protein_coding
ENSG00000154065 (ANKRD29)
ankyrin repeat domain 29 		ENST00000322980 (ANKRD29-002) 23600460-23662815 protein_coding
ENST00000585908 (ANKRD29-004) 23648411-23662772 protein_coding
ENST00000586087 (ANKRD29-008) 23629852-23662883 protein_coding
ENST00000586511 (ANKRD29-006) 23618541-23619723 processed_transcript
ENST00000587763 (ANKRD29-007) 23601046-23629920 nonsense_mediated_decay
ENST00000591280 (ANKRD29-003) 23600010-23647997 retained_intron
ENST00000591617 (ANKRD29-005) 23601277-23619824 retained_intron
ENST00000592179 (ANKRD29-001) 23598926-23662885 protein_coding
ENSG00000199366 (Y_RNA)
Y RNA 		ENST00000362496 (Y_RNA.1-223) 23582016-23582121 misc_RNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0005WW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024413-ENSMUSG00000057766 CGP 10090 18:12189693-12305720
GeneTranscriptPositionBiotype
ENSMUSG00000024410 (3110002H16Rik)
RIKEN cDNA 3110002H16 gene 		ENSMUST00000025276 (3110002H16Rik-001) 12168717-12189997 protein_coding
ENSMUST00000126523 (3110002H16Rik-002) 12168717-12181116 retained_intron
ENSMUST00000127123 (3110002H16Rik-003) 12168752-12189974 retained_intron
ENSMUST00000134046 (3110002H16Rik-006) 12179570-12184915 protein_coding
ENSMUST00000134756 (3110002H16Rik-009) 12188992-12189974 retained_intron
ENSMUST00000138866 (3110002H16Rik-007) 12180525-12188220 nonsense_mediated_decay
ENSMUST00000139151 (3110002H16Rik-004) 12185431-12189974 retained_intron
ENSMUST00000153233 (3110002H16Rik-008) 12185655-12189931 retained_intron
ENSMUST00000155431 (3110002H16Rik-005) 12168739-12180571 retained_intron
ENSMUSG00000024413 (Npc1)
Niemann-Pick type C1 		ENSMUST00000025279 (Npc1-001) 12189693-12236400 protein_coding
ENSMUST00000133112 (Npc1-002) 12217578-12236358 retained_intron
ENSMUST00000144435 (Npc1-005) 12221846-12224087 processed_transcript
ENSMUST00000145771 (Npc1-006) 12210384-12212554 processed_transcript
ENSMUST00000149211 (Npc1-003) 12217994-12236326 retained_intron
ENSMUSG00000057766 (Ankrd29)
ankyrin repeat domain 29 		ENSMUST00000118525 (Ankrd29-001) 12252362-12305711 protein_coding
ENSMUST00000122408 (Ankrd29-002) 12254582-12305638 protein_coding
ENSMUST00000137948 (Ankrd29-003) 12252365-12271697 processed_transcript
ENSMUST00000142066 (Ankrd29-004) 12275760-12305720 protein_coding
ENSMUSG00000082051 (Gm16072)
predicted gene 16072 		ENSMUST00000119574 (Gm16072-001) 12287404-12289780 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WW_0001ENSG00000141452ENST00000269221ENST00000587690ENST00000589215ENST00000590868ENST00000590870ENST00000592119ENSG00000141458ENST00000269228ENST00000586150ENST00000591051ENSG00000154065ENST00000322980ENST00000585908ENST00000587763ENST00000591280ENST00000591617ENST00000592179ENSG00000199366ENST00000362496CIL_0005WW_0002ENSMUSG00000024410ENSMUST00000025276ENSMUST00000127123ENSMUST00000139151ENSMUSG00000024413ENSMUST00000025279ENSMUSG00000057766ENSMUST00000118525ENSMUST00000122408ENSMUST00000137948ENSMUST00000142066ENSMUSG00000082051ENSMUST00000119574
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141452 ENST00000269221 5.125±0.00 N/A 3.056±0.00 6.489±0.00 N/A 4.344±0.00 0.632±0.00 1.511±0.00 3.324±0.44 5.540±0.00 N/A 5.402±1.88 5.693±0.40 13.691±2.87
ENST00000587153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.618±0.00
ENST00000589215 N/A N/A 2.804±0.00 N/A N/A N/A N/A N/A N/A N/A 0.825±0.00 N/A N/A N/A
ENST00000589409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590868 N/A N/A N/A N/A N/A N/A 4.384±0.00 N/A N/A N/A 9.723±0.00 N/A N/A N/A
ENST00000590870 N/A 7.680±0.00 N/A N/A 4.446±0.16 N/A N/A 5.437±3.12 3.672±0.00 N/A N/A N/A N/A N/A
ENST00000591367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592119 N/A N/A N/A N/A N/A N/A N/A 7.496±0.00 N/A N/A N/A N/A N/A N/A
ENST00000592682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141458 ENST00000269228 5.506±0.00 5.682±0.00 1.191±0.00 11.421±7.59 3.122±1.37 6.603±0.00 3.600±0.00 6.164±0.00 2.184±0.56 9.570±6.65 6.610±0.00 7.149±0.17 9.544±3.10 6.012±3.27
ENST00000540608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586150 N/A N/A N/A N/A N/A N/A 2.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000586718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591051 4.975±0.00 5.237±0.00 N/A 10.804±0.00 N/A 5.890±0.00 0.334±0.00 2.207±0.00 2.481±0.00 7.618±4.09 1.419±0.00 3.999±1.37 9.640±3.63 8.220±0.00
ENST00000591075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000154065 ENST00000322980 0.992±0.00 2.108±0.00 0.148±0.00 2.782±0.00 0.974±0.72 0.634±0.58 0.996±0.00 0.610±0.00 N/A 3.570±1.91 N/A 1.349±1.02 0.018±0.00 1.038±0.13
ENST00000585908 N/A 2.925±0.00 N/A N/A 0.295±0.00 0.134±0.00 0.263±0.00 N/A 0.603±0.00 3.216±0.00 N/A 0.300±0.08 0.028±0.00 0.737±0.00
ENST00000586087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587763 N/A N/A 0.291±0.00 N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A 0.781±0.00 0.171±0.00 N/A
ENST00000591280 N/A 0.647±0.00 0.068±0.00 N/A 0.430±0.27 N/A 0.383±0.00 N/A 0.347±0.31 N/A 0.155±0.00 0.085±0.01 0.046±0.00 0.239±0.00
ENST00000591617 N/A N/A N/A N/A 1.226±0.00 N/A N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A
ENST00000592179 N/A 2.270±0.00 N/A 1.631±0.16 1.047±0.00 0.534±0.00 0.879±0.00 0.176±0.15 0.067±0.00 2.844±0.00 0.050±0.00 2.090±0.00 0.031±0.01 0.748±0.00
ENSG00000199366 ENST00000362496 N/A N/A N/A N/A 1.937±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024410 ENSMUST00000025276 20.033±6.26 18.396±1.88 8.256±0.97 8.066±1.58 15.824±1.36 11.618±2.84 10.412±0.48 8.523±0.60 14.822±6.73 13.454±0.28 4.568±0.70 10.981±1.50 9.016±2.12 3.540±0.45
ENSMUST00000126523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127123 N/A N/A N/A N/A N/A 5.724±0.62 N/A N/A 12.768±4.14 N/A N/A N/A N/A N/A
ENSMUST00000134046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139151 N/A N/A N/A 2.717±0.16 N/A N/A N/A N/A 4.084±0.09 N/A N/A N/A N/A N/A
ENSMUST00000153233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024413 ENSMUST00000025279 10.497±3.54 19.128±2.63 7.754±2.06 9.063±1.20 11.447±2.21 13.008±1.19 7.564±0.59 4.778±0.83 11.069±4.98 26.674±2.60 6.835±1.73 14.941±4.40 18.023±4.68 1.534±0.20
ENSMUST00000133112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057766 ENSMUST00000118525 1.252±0.51 0.582±0.10 1.495±0.16 1.381±0.49 0.606±0.13 0.179±0.15 0.472±0.34 1.217±0.16 0.071±0.04 1.837±0.48 0.136±0.04 0.875±0.43 0.379±0.09 0.091±0.01
ENSMUST00000122408 1.794±0.57 1.259±0.21 N/A N/A 1.146±0.62 0.747±0.24 0.958±0.22 1.420±0.29 0.136±0.03 2.207±0.87 0.080±0.00 1.167±0.73 0.805±0.02 0.193±0.09
ENSMUST00000137948 1.128±0.00 0.479±0.00 N/A 1.419±0.00 N/A 0.238±0.10 N/A N/A 0.067±0.05 N/A 0.126±0.05 0.839±0.47 0.321±0.13 0.057±0.01
ENSMUST00000142066 N/A 1.767±0.09 N/A N/A N/A 0.339±0.00 N/A N/A 0.230±0.13 N/A N/A 2.073±0.59 N/A 0.376±0.23
ENSMUSG00000082051 ENSMUST00000119574 N/A 0.122±0.04 0.021±0.00 0.080±0.02 0.050±0.02 0.049±0.00 0.033±0.00 0.087±0.03 0.004±0.00 0.122±0.02 N/A 0.171±0.11 0.026±0.02 N/A

Loading