C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141458-ENSG00000154065 CGP 9606 18:23506184-23662885
GeneTranscriptPositionBiotype
ENSG00000141452 (C18orf8)
chromosome 18 open reading frame 8 		ENST00000269221 (C18orf8-001) 23503509-23531782 protein_coding
ENST00000587153 (C18orf8-007) 23503519-23504722 retained_intron
ENST00000587690 (C18orf8-005) 23503520-23515886 nonsense_mediated_decay
ENST00000589215 (C18orf8-003) 23503513-23531778 nonsense_mediated_decay
ENST00000589409 (C18orf8-010) 23529966-23531779 retained_intron
ENST00000589860 (C18orf8-008) 23503531-23519166 nonsense_mediated_decay
ENST00000590387 (C18orf8-009) 23527874-23529482 retained_intron
ENST00000590868 (C18orf8-004) 23503519-23531776 protein_coding
ENST00000590870 (C18orf8-002) 23503533-23531743 nonsense_mediated_decay
ENST00000591367 (C18orf8-013) 23529338-23531782 processed_transcript
ENST00000592119 (C18orf8-006) 23503535-23509677 protein_coding
ENST00000592682 (C18orf8-011) 23529965-23530536 retained_intron
ENST00000593081 (C18orf8-012) 23529596-23531782 retained_intron
ENST00000615148 (C18orf8-201) 23503470-23531807 protein_coding
ENSG00000141458 (NPC1)
Niemann-Pick disease, type C1 		ENST00000269228 (NPC1-001) 23531437-23586898 protein_coding
ENST00000540608 (NPC1-004) 23539730-23586487 processed_transcript
ENST00000586150 (NPC1-012) 23529293-23535700 protein_coding
ENST00000586718 (NPC1-009) 23539823-23541372 retained_intron
ENST00000587163 (NPC1-011) 23533202-23534560 retained_intron
ENST00000587223 (NPC1-005) 23573452-23576947 processed_transcript
ENST00000588867 (NPC1-010) 23531722-23535700 retained_intron
ENST00000590301 (NPC1-006) 23551546-23554985 retained_intron
ENST00000590723 (NPC1-014) 23522315-23533517 protein_coding
ENST00000591051 (NPC1-003) 23531946-23560342 protein_coding
ENST00000591075 (NPC1-007) 23536742-23539898 retained_intron
ENST00000591107 (NPC1-002) 23506184-23535622 protein_coding
ENST00000591955 (NPC1-008) 23536700-23538925 retained_intron
ENST00000593280 (NPC1-013) 23528207-23533440 protein_coding
ENSG00000154065 (ANKRD29)
ankyrin repeat domain 29 		ENST00000322980 (ANKRD29-002) 23600460-23662815 protein_coding
ENST00000585908 (ANKRD29-004) 23648411-23662772 protein_coding
ENST00000586087 (ANKRD29-008) 23629852-23662883 protein_coding
ENST00000586511 (ANKRD29-006) 23618541-23619723 processed_transcript
ENST00000587763 (ANKRD29-007) 23601046-23629920 nonsense_mediated_decay
ENST00000591280 (ANKRD29-003) 23600010-23647997 retained_intron
ENST00000591617 (ANKRD29-005) 23601277-23619824 retained_intron
ENST00000592179 (ANKRD29-001) 23598926-23662885 protein_coding
ENSG00000199366 (Y_RNA)
Y RNA 		ENST00000362496 (Y_RNA.1-223) 23582016-23582121 misc_RNA
CIL_0005WW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024413-ENSMUSG00000057766 CGP 10090 18:12189693-12305720
GeneTranscriptPositionBiotype
ENSMUSG00000024410 (3110002H16Rik)
RIKEN cDNA 3110002H16 gene 		ENSMUST00000025276 (3110002H16Rik-001) 12168717-12189997 protein_coding
ENSMUST00000126523 (3110002H16Rik-002) 12168717-12181116 retained_intron
ENSMUST00000127123 (3110002H16Rik-003) 12168752-12189974 retained_intron
ENSMUST00000134046 (3110002H16Rik-006) 12179570-12184915 protein_coding
ENSMUST00000134756 (3110002H16Rik-009) 12188992-12189974 retained_intron
ENSMUST00000138866 (3110002H16Rik-007) 12180525-12188220 nonsense_mediated_decay
ENSMUST00000139151 (3110002H16Rik-004) 12185431-12189974 retained_intron
ENSMUST00000153233 (3110002H16Rik-008) 12185655-12189931 retained_intron
ENSMUST00000155431 (3110002H16Rik-005) 12168739-12180571 retained_intron
ENSMUSG00000024413 (Npc1)
Niemann-Pick type C1 		ENSMUST00000025279 (Npc1-001) 12189693-12236400 protein_coding
ENSMUST00000133112 (Npc1-002) 12217578-12236358 retained_intron
ENSMUST00000144435 (Npc1-005) 12221846-12224087 processed_transcript
ENSMUST00000145771 (Npc1-006) 12210384-12212554 processed_transcript
ENSMUST00000149211 (Npc1-003) 12217994-12236326 retained_intron
ENSMUSG00000057766 (Ankrd29)
ankyrin repeat domain 29 		ENSMUST00000118525 (Ankrd29-001) 12252362-12305711 protein_coding
ENSMUST00000122408 (Ankrd29-002) 12254582-12305638 protein_coding
ENSMUST00000137948 (Ankrd29-003) 12252365-12271697 processed_transcript
ENSMUST00000142066 (Ankrd29-004) 12275760-12305720 protein_coding
ENSMUSG00000082051 (Gm16072)
predicted gene 16072 		ENSMUST00000119574 (Gm16072-001) 12287404-12289780 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WW_0001ENSG00000141452ENST00000269221ENST00000587690ENST00000589215ENST00000590868ENST00000590870ENST00000592119ENSG00000141458ENST00000269228ENST00000586150ENST00000591051ENSG00000154065ENST00000322980ENST00000585908ENST00000587763ENST00000591280ENST00000591617ENST00000592179ENSG00000199366ENST00000362496CIL_0005WW_0002ENSMUSG00000024410ENSMUST00000025276ENSMUST00000127123ENSMUST00000139151ENSMUSG00000024413ENSMUST00000025279ENSMUSG00000057766ENSMUST00000118525ENSMUST00000122408ENSMUST00000137948ENSMUST00000142066ENSMUSG00000082051ENSMUST00000119574
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141452 ENST00000269221 5.125±0.00 N/A 3.056±0.00 6.489±0.00 N/A 4.344±0.00 0.632±0.00 1.511±0.00 3.324±0.44 5.540±0.00 N/A 5.402±1.88 5.693±0.40 13.691±2.87
ENST00000587153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.618±0.00
ENST00000589215 N/A N/A 2.804±0.00 N/A N/A N/A N/A N/A N/A N/A 0.825±0.00 N/A N/A N/A
ENST00000589409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590868 N/A N/A N/A N/A N/A N/A 4.384±0.00 N/A N/A N/A 9.723±0.00 N/A N/A N/A
ENST00000590870 N/A 7.680±0.00 N/A N/A 4.446±0.16 N/A N/A 5.437±3.12 3.672±0.00 N/A N/A N/A N/A N/A
ENST00000591367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592119 N/A N/A N/A N/A N/A N/A N/A 7.496±0.00 N/A N/A N/A N/A N/A N/A
ENST00000592682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141458 ENST00000269228 5.506±0.00 5.682±0.00 1.191±0.00 11.421±7.59 3.122±1.37 6.603±0.00 3.600±0.00 6.164±0.00 2.184±0.56 9.570±6.65 6.610±0.00 7.149±0.17 9.544±3.10 6.012±3.27
ENST00000540608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586150 N/A N/A N/A N/A N/A N/A 2.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000586718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591051 4.975±0.00 5.237±0.00 N/A 10.804±0.00 N/A 5.890±0.00 0.334±0.00 2.207±0.00 2.481±0.00 7.618±4.09 1.419±0.00 3.999±1.37 9.640±3.63 8.220±0.00
ENST00000591075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000154065 ENST00000322980 0.992±0.00 2.108±0.00 0.148±0.00 2.782±0.00 0.974±0.72 0.634±0.58 0.996±0.00 0.610±0.00 N/A 3.570±1.91 N/A 1.349±1.02 0.018±0.00 1.038±0.13
ENST00000585908 N/A 2.925±0.00 N/A N/A 0.295±0.00 0.134±0.00 0.263±0.00 N/A 0.603±0.00 3.216±0.00 N/A 0.300±0.08 0.028±0.00 0.737±0.00
ENST00000586087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587763 N/A N/A 0.291±0.00 N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A 0.781±0.00 0.171±0.00 N/A
ENST00000591280 N/A 0.647±0.00 0.068±0.00 N/A 0.430±0.27 N/A 0.383±0.00 N/A 0.347±0.31 N/A 0.155±0.00 0.085±0.01 0.046±0.00 0.239±0.00
ENST00000591617 N/A N/A N/A N/A 1.226±0.00 N/A N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A
ENST00000592179 N/A 2.270±0.00 N/A 1.631±0.16 1.047±0.00 0.534±0.00 0.879±0.00 0.176±0.15 0.067±0.00 2.844±0.00 0.050±0.00 2.090±0.00 0.031±0.01 0.748±0.00
ENSG00000199366 ENST00000362496 N/A N/A N/A N/A 1.937±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024410 ENSMUST00000025276 20.033±6.26 18.396±1.88 8.256±0.97 8.066±1.58 15.824±1.36 11.618±2.84 10.412±0.48 8.523±0.60 14.822±6.73 13.454±0.28 4.568±0.70 10.981±1.50 9.016±2.12 3.540±0.45
ENSMUST00000126523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127123 N/A N/A N/A N/A N/A 5.724±0.62 N/A N/A 12.768±4.14 N/A N/A N/A N/A N/A
ENSMUST00000134046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139151 N/A N/A N/A 2.717±0.16 N/A N/A N/A N/A 4.084±0.09 N/A N/A N/A N/A N/A
ENSMUST00000153233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024413 ENSMUST00000025279 10.497±3.54 19.128±2.63 7.754±2.06 9.063±1.20 11.447±2.21 13.008±1.19 7.564±0.59 4.778±0.83 11.069±4.98 26.674±2.60 6.835±1.73 14.941±4.40 18.023±4.68 1.534±0.20
ENSMUST00000133112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057766 ENSMUST00000118525 1.252±0.51 0.582±0.10 1.495±0.16 1.381±0.49 0.606±0.13 0.179±0.15 0.472±0.34 1.217±0.16 0.071±0.04 1.837±0.48 0.136±0.04 0.875±0.43 0.379±0.09 0.091±0.01
ENSMUST00000122408 1.794±0.57 1.259±0.21 N/A N/A 1.146±0.62 0.747±0.24 0.958±0.22 1.420±0.29 0.136±0.03 2.207±0.87 0.080±0.00 1.167±0.73 0.805±0.02 0.193±0.09
ENSMUST00000137948 1.128±0.00 0.479±0.00 N/A 1.419±0.00 N/A 0.238±0.10 N/A N/A 0.067±0.05 N/A 0.126±0.05 0.839±0.47 0.321±0.13 0.057±0.01
ENSMUST00000142066 N/A 1.767±0.09 N/A N/A N/A 0.339±0.00 N/A N/A 0.230±0.13 N/A N/A 2.073±0.59 N/A 0.376±0.23
ENSMUSG00000082051 ENSMUST00000119574 N/A 0.122±0.04 0.021±0.00 0.080±0.02 0.050±0.02 0.049±0.00 0.033±0.00 0.087±0.03 0.004±0.00 0.122±0.02 N/A 0.171±0.11 0.026±0.02 N/A

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