C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422792 AC079807.3-001 ENSG00000236549 9606 + 2:47883455-47883909 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000422792
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000422792 0.159±0.00 0.240±0.00 0.156±0.00 0.492±0.00 0.787±0.00 0.073±0.02 0.489±0.15 0.046±0.00 0.516±0.00 0.150±0.10 0.175±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066I CIL_00066I_0001 CGP 2:47695530-47905793
CIL_00063U CIL_00063U_0001 CGP 2:47789316-48379294

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 412
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 412
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 6e-27 124
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 0.0000000000001 81

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