C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15a pseudogene 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413110 RPS15AP38-001 ENSG00000237668 9606 - 22:36421273-36421644 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungMuscleOvaryPlacentaTestisENST00000413110
Transcript ID Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENST00000413110 0.086±0.00 0.245±0.16 0.115±0.00 0.673±0.00 0.072±0.00 0.369±0.05 0.167±0.00 0.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EZ CIL_0006EZ_0002 CGP 22:36281281-36482030

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117476 Rps15a-ps6-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000172457 Rps15a-201 protein_coding Mus_musculus 0 392
ENSMUST00000106588 Rps15a-004 protein_coding Mus_musculus 0 392
ENSMUST00000131374 Rps15a-001 protein_coding Mus_musculus 0 392
ENSMUST00000087473 Rps15a-ps2-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000132586 Rps15a-ps5-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000121072 Rps15a-ps3-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000182051 Gm26983-001 processed_pseudogene Mus_musculus 0 357
ENSDART00000128613 rps15a-001 protein_coding Danio_rerio 0 327
ENSDART00000018822 rps15a-002 retained_intron Danio_rerio 1e-37 159

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