C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13a pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000430133 RPL13AP6-001 ENSG00000234118 9606 - 10:110936622-110937233 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungOvaryPlacentaTestisENST00000430133
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Ovary Placenta Testis
ENST00000430133 0.390±0.00 1.669±0.00 2.033±0.00 0.172±0.00 0.292±0.00 0.244±0.10 0.260±0.14 0.636±0.35 0.725±0.61 0.122±0.00 0.423±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0006FA CIL_0006FA_0001 CGP 10:110919547-111080907

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 638
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 623
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 575
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 562
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 0 342
ENSMUST00000187187 RP23-19M11.4-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000131697 Rpl13a-005 retained_intron Mus_musculus 0 289
ENSMUST00000141807 Rpl13a-002 processed_transcript Mus_musculus 0 289
ENSMUST00000138887 Rpl13a-007 retained_intron Mus_musculus 8.00001e-42 174

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