C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L15, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122372 Rpl15-ps4-001 ENSMUSG00000082508 10090 + 2:38777736-38778341 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastKidneyLiverOvaryTestisENSMUST00000122372
Transcript ID Adrenal Bladder Brain Breast Kidney Liver Ovary Testis
ENSMUST00000122372 0.256±0.00 0.026±0.01 0.069±0.00 0.197±0.00 0.141±0.04 0.116±0.13 0.639±0.25 0.188±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_00075I CIL_00075I_0002 CGP 2:38692656-38927688
CIL_00075J CIL_00075J_0002 CGP 2:38723370-38963753

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307839 RPL15-001 protein_coding Homo_sapiens 0 309
ENST00000354811 RPL15-007 protein_coding Homo_sapiens 0 309
ENST00000391491 RPL15P3-001 processed_pseudogene Homo_sapiens 0 298
ENST00000412097 RPL15-011 protein_coding Homo_sapiens 0 254
ENST00000413699 RPL15-002 protein_coding Homo_sapiens 0 309
ENST00000414329 RP11-106M7.4-001 processed_pseudogene Homo_sapiens 3.00004e-41 172
ENST00000415719 RPL15-013 protein_coding Homo_sapiens 0 309
ENST00000416278 RP11-570G20.1-001 processed_pseudogene Homo_sapiens 0 268
ENST00000422772 AC093107.7-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000422915 RP1-40G4P.1-001 processed_pseudogene Homo_sapiens 3e-40 169
ENST00000429515 AC097523.1-001 processed_pseudogene Homo_sapiens 9.80909e-45 183
ENST00000432924 RPL15P18-001 processed_pseudogene Homo_sapiens 0 231
ENST00000434031 RPL15-014 protein_coding Homo_sapiens 0 270
ENST00000435882 RPL15-005 protein_coding Homo_sapiens 0 309
ENST00000436146 RPL15-008 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000439829 AP002381.2-001 processed_pseudogene Homo_sapiens 0 215
ENST00000455192 AC092569.2-001 processed_pseudogene Homo_sapiens 9e-33 143
ENST00000465786 RPL15-006 retained_intron Homo_sapiens 0 217
ENST00000475247 RP11-214O14.1-001 processed_pseudogene Homo_sapiens 1e-34 150
ENST00000475768 AP000797.1-001 processed_pseudogene Homo_sapiens 2e-32 143
ENST00000477936 RP11-113C12.2-001 processed_pseudogene Homo_sapiens 0 259
ENST00000482912 RPL15P20-001 processed_pseudogene Homo_sapiens 2e-37 159
ENST00000487352 RP11-100N21.1-001 processed_pseudogene Homo_sapiens 0 261
ENST00000490223 RPL15-004 retained_intron Homo_sapiens 0 217
ENST00000490252 RPL15P2-001 processed_pseudogene Homo_sapiens 5.99756e-43 178
ENST00000567709 RP11-151H2.3-001 processed_pseudogene Homo_sapiens 9e-39 163
ENST00000611050 RPL15-202 protein_coding Homo_sapiens 0 309

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