C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007S6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs52 VISTA 9606 16:53809942-54410955
GeneTranscriptPositionBiotype
ENSG00000140718 (FTO)
fat mass and obesity associated 		ENST00000268349 (FTO-008) 53934030-54114463 protein_coding
ENST00000431610 (FTO-006) 53886917-54112138 protein_coding
ENST00000460382 (FTO-002) 53886930-54112987 protein_coding
ENST00000463855 (FTO-005) 53911256-54114463 protein_coding
ENST00000464071 (FTO-003) 53704182-54112087 nonsense_mediated_decay
ENST00000471389 (FTO-001) 53703963-54121941 protein_coding
ENST00000472835 (FTO-007) 54063637-54112302 processed_transcript
ENST00000570395 (FTO-009) 53704156-53825968 processed_transcript
ENSG00000177508 (IRX3)
iroquois homeobox 3 		ENST00000329734 (IRX3-001) 54283304-54286763 protein_coding
ENST00000558054 (IRX3-003) 54283436-54285855 protein_coding
ENST00000558180 (IRX3-002) 54284120-54286724 retained_intron
ENSG00000259517 (RP11-324D17.1)
 ENST00000561336 (RP11-324D17.1-001) 54245618-54270746 lincRNA
ENSG00000260194 (RP11-357N13.2)
 ENST00000565641 (RP11-357N13.2-001) 53998313-53999969 antisense
ENSG00000260936 (FTO-IT1)
FTO intronic transcript 1 (non-protein coding) 		ENST00000563011 (FTO-IT1-001) 54039393-54040726 sense_intronic
ENSG00000261049 (RP11-357N13.1)
 ENST00000563879 (RP11-357N13.1-001) 54033997-54054583 antisense
ENSG00000261630 (RP11-357N13.3)
 ENST00000564801 (RP11-357N13.3-001) 53981229-53981912 antisense
ENSG00000275147 (RP11-324D17.3)
 ENST00000612285 (RP11-324D17.3-001) 54152855-54153448 lincRNA
ENSG00000277559 (RP11-434E6.4)
 ENST00000616682 (RP11-434E6.4-001) 54290965-54292422 lincRNA
ENSG00000280392 (RP11-357N13.6)
 ENST00000624987 (RP11-357N13.6-001) 53991012-53994454 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0007S6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs52 VISTA 10090 8:91364604-91965497
GeneTranscriptPositionBiotype
ENSMUSG00000031734 (Irx3)
Iroquois related homeobox 3 		ENSMUST00000093312 (Irx3-002) 91798525-91801915 protein_coding
ENSMUST00000175795 (Irx3-001) 91798525-91801916 protein_coding
ENSMUSG00000055932 (Fto)
fat mass and obesity associated 		ENSMUST00000069718 (Fto-001) 91313532-91668439 protein_coding
ENSMUST00000125471 (Fto-002) 91313535-91444766 retained_intron
ENSMUST00000128081 (Fto-005) 91313558-91526230 retained_intron
ENSMUST00000136802 (Fto-004) 91313568-91487791 retained_intron
ENSMUST00000140276 (Fto-003) 91467685-91666946 processed_transcript
ENSMUST00000149913 (Fto-006) 91390555-91409464 protein_coding
ENSMUST00000166548 (Fto-007) 91387736-91409840 protein_coding
ENSMUSG00000090778 (Gm3235)
predicted gene 3235 		ENSMUST00000168442 (Gm3235-001) 91621448-91629729 antisense
ENSMUSG00000099664 (RP23-382M10.2)
predicted gene 28511 		ENSMUST00000191594 (RP23-382M10.2-001) 91865871-91872995 lincRNA
ENSMUSG00000099812 (RP24-173E19.1)
predicted gene 28515 		ENSMUST00000189823 (RP24-173E19.1-001) 91907565-91913066 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007S6_0001ENSG00000140718ENST00000268349ENST00000431610ENST00000460382ENST00000463855ENST00000464071ENST00000471389ENST00000472835ENST00000570395ENSG00000177508ENST00000329734ENST00000558054ENST00000558180ENSG00000259517ENST00000561336ENSG00000260194ENST00000565641ENSG00000260936ENST00000563011ENSG00000261049ENST00000563879ENSG00000261630ENST00000564801ENSG00000275147ENST00000612285ENSG00000277559ENST00000616682ENSG00000280392ENST00000624987CIL_0007S6_0002ENSMUSG00000031734ENSMUST00000093312ENSMUST00000175795ENSMUSG00000055932ENSMUST00000069718ENSMUST00000125471ENSMUST00000128081ENSMUST00000136802ENSMUST00000140276ENSMUST00000149913ENSMUST00000166548ENSMUSG00000090778ENSMUST00000168442ENSMUSG00000099664ENSMUST00000191594ENSMUSG00000099812ENSMUST00000189823
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007S6_0001ENSG00000140718ENST00000268349ENST00000463855ENST00000464071ENST00000471389ENSG00000177508ENST00000329734ENST00000558054ENST00000558180ENSG00000259517ENST00000561336ENSG00000260194ENST00000565641ENSG00000260936ENST00000563011ENSG00000261049ENST00000563879ENSG00000261630ENST00000564801ENSG00000275147ENST00000612285ENSG00000277559ENST00000616682ENSG00000280392ENST00000624987CIL_0007S6_0002ENSMUSG00000031734ENSMUST00000093312ENSMUST00000175795ENSMUSG00000055932ENSMUST00000069718ENSMUST00000140276ENSMUSG00000090778ENSMUST00000168442ENSMUSG00000099664ENSMUST00000191594ENSMUSG00000099812ENSMUST00000189823
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140718 ENST00000268349 10.916±0.00 8.191±0.00 2.551±0.00 19.439±6.21 13.679±0.00 5.623±3.28 3.083±1.32 5.724±3.36 5.173±0.12 6.958±3.70 6.344±5.31 5.343±2.72 7.145±0.36 5.652±3.18
ENST00000431610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.018±0.00 N/A N/A
ENST00000464071 12.597±0.00 8.627±0.00 6.088±0.00 30.425±1.46 12.123±0.81 6.073±0.49 7.658±0.00 8.735±0.75 7.220±4.49 11.379±1.73 9.242±2.03 10.956±8.32 6.068±1.47 6.240±2.53
ENST00000471389 0.807±0.00 0.595±0.00 1.041±0.00 2.199±0.34 1.204±0.33 0.568±0.00 0.905±0.00 0.727±0.04 0.403±0.18 1.473±0.59 0.720±0.04 1.086±0.54 0.676±0.27 0.625±0.00
ENST00000472835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000177508 ENST00000329734 0.633±0.00 6.251±0.00 N/A 0.132±0.00 1.748±1.66 0.162±0.00 6.725±6.18 3.808±3.55 0.177±0.06 4.680±1.90 2.463±0.00 0.964±0.75 0.778±0.18 0.886±0.80
ENST00000558054 N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 0.631±0.00 N/A 0.692±0.00 N/A N/A N/A
ENST00000558180 N/A N/A N/A 0.075±0.00 3.018±2.41 0.741±0.00 0.551±0.00 N/A N/A N/A 2.008±0.00 1.055±0.71 N/A 0.562±0.48
ENSG00000259517 ENST00000561336 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A 0.134±0.00 N/A N/A N/A N/A 1.317±0.49
ENSG00000260194 ENST00000565641 N/A 0.016±0.00 N/A 0.079±0.00 0.456±0.43 0.100±0.00 0.043±0.00 N/A 0.327±0.00 N/A N/A 0.119±0.12 N/A 0.025±0.01
ENSG00000260936 ENST00000563011 0.313±0.00 0.694±0.00 0.899±0.00 0.171±0.00 1.182±0.90 0.448±0.40 0.134±0.07 N/A 0.312±0.27 1.752±0.15 0.065±0.00 0.192±0.14 0.142±0.04 0.210±0.00
ENSG00000261049 ENST00000563879 N/A N/A N/A 0.255±0.00 0.581±0.00 0.455±0.00 N/A N/A N/A 0.229±0.00 0.213±0.00 0.113±0.00 N/A 0.419±0.04
ENSG00000261630 ENST00000564801 0.972±0.00 1.469±0.00 1.118±0.00 1.187±0.22 0.658±0.51 0.244±0.02 0.416±0.12 1.768±0.00 0.374±0.00 1.371±0.10 0.634±0.00 0.369±0.11 N/A 0.467±0.20
ENSG00000275147 ENST00000612285 N/A 0.076±0.00 N/A N/A 0.552±0.00 N/A N/A 0.051±0.00 N/A N/A 0.023±0.00 N/A N/A 0.070±0.00
ENSG00000277559 ENST00000616682 0.220±0.00 0.241±0.00 N/A 0.180±0.00 0.217±0.00 0.011±0.00 0.069±0.00 0.233±0.00 0.032±0.00 0.156±0.00 0.011±0.00 0.538±0.16 0.145±0.07 0.215±0.00
ENSG00000280392 ENST00000624987 0.006±0.00 0.012±0.00 0.766±0.00 0.157±0.10 0.414±0.36 0.199±0.19 0.115±0.08 0.056±0.03 1.588±0.00 0.892±0.00 0.096±0.00 0.256±0.37 N/A 0.034±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031734 ENSMUST00000093312 N/A N/A 0.248±0.00 N/A 0.072±0.00 0.037±0.02 N/A N/A 0.049±0.02 N/A 0.804±0.00 3.181±0.00 N/A 0.023±0.00
ENSMUST00000175795 1.325±0.84 8.292±1.53 0.237±0.00 7.284±4.65 6.159±3.26 0.048±0.03 6.080±2.49 13.075±2.07 0.057±0.03 31.280±3.66 1.219±0.30 12.258±3.86 18.088±10.70 0.085±0.04
ENSMUSG00000055932 ENSMUST00000069718 24.486±2.38 16.514±2.48 27.982±0.38 41.561±19.29 21.056±4.40 12.488±0.62 18.887±1.37 21.556±0.61 9.817±0.83 19.840±1.36 26.728±1.18 26.244±5.39 12.559±5.42 19.767±8.24
ENSMUST00000125471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140276 N/A N/A N/A 74.177±0.00 N/A N/A N/A N/A N/A N/A N/A 46.370±0.00 19.704±0.38 25.350±13.65
ENSMUST00000149913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090778 ENSMUST00000168442 0.479±0.26 0.129±0.00 N/A 1.009±0.72 0.790±0.37 0.228±0.11 1.585±0.27 0.340±0.20 0.195±0.15 0.235±0.14 1.484±0.49 0.579±0.22 0.645±0.32 0.295±0.00
ENSMUSG00000099664 ENSMUST00000191594 N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A 0.141±0.06 0.370±0.12 N/A 0.173±0.00 0.157±0.00
ENSMUSG00000099812 ENSMUST00000189823 N/A 0.067±0.00 N/A 0.013±0.00 N/A N/A 0.013±0.00 N/A 0.009±0.01 0.029±0.01 N/A 0.049±0.03 0.165±0.11 N/A

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