C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3 pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449709 HMGB3P8-001 ENSG00000227096 9606 - 10:116439468-116440044 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeOvaryENST00000449709
Transcript ID Adipose Ovary
ENST00000449709 0.075±0.00 0.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088K CIL_00088K_0001 VISTA 10:115892604-116494065
CIL_0008H3 CIL_0008H3_0001 VISTA 10:115937655-116538917

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 654
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 654
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 654
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 654
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 654
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 640
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 521
ENSMUST00000162465 Hmgb3-ps-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000117771 Gm5752-001 processed_pseudogene Mus_musculus 0 377

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