C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536368 RPL12-201 ENSG00000197958 9606 - 9:127447677-127451373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyOvaryPlacentaTestisENST00000536368
Transcript ID Brain Colon Kidney Ovary Placenta Testis
ENST00000536368 69.017±0.00 171.049±0.00 204.284±0.00 521.990±0.00 311.520±0.00 134.522±28.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0001 VISTA 9:127227593-127829012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122012 Gm6285-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000121857 Gm15793-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000092011 Gm16519-201 protein_coding Mus_musculus 0 283
ENSMUST00000079794 Gm15732-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000092620 Gm10275-002 processed_transcript Mus_musculus 0 237
ENSMUST00000076703 Gm9396-001 protein_coding Mus_musculus 0 237
ENSMUST00000125415 Rpl12-004 processed_transcript Mus_musculus 0 237
ENSMUST00000126610 Rpl12-001 protein_coding Mus_musculus 0 237
ENSMUST00000121298 Rpl12-ps2-001 processed_pseudogene Mus_musculus 6e-37 158
ENSMUST00000102811 Rpl12-002 processed_transcript Mus_musculus 2e-36 156
ENSMUST00000133842 Rpl12-005 processed_transcript Mus_musculus 2e-36 156
ENSMUST00000154340 Rpl12-003 processed_transcript Mus_musculus 2e-36 156
ENSMUST00000134912 Rpl12-007 processed_transcript Mus_musculus 2e-36 156
ENSDART00000141676 rpl12-002 processed_transcript Danio_rerio 0.00000001 64
ENSDART00000135459 rpl12-003 retained_intron Danio_rerio 0.00000001 64
ENSDART00000008807 rpl12-001 protein_coding Danio_rerio 0.00000001 64

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