C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 9396
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076703 Gm9396-001 ENSMUSG00000063328 10090 + 3:130068412-130068978 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000076703
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000076703 0.091±0.00 0.083±0.03 15.900±18.04 0.329±0.23 0.117±0.00 0.081±0.00 4.510±9.85 0.185±0.04 0.102±0.09 10.428±10.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141676 rpl12-002 processed_transcript Danio_rerio 0.0000000004 69
ENSDART00000135459 rpl12-003 retained_intron Danio_rerio 0.0000000004 69
ENSDART00000008807 rpl12-001 protein_coding Danio_rerio 0.0000000004 69
ENST00000310055 RP11-344H11.4-001 unprocessed_pseudogene Homo_sapiens 0 497
ENST00000361436 RPL12-001 protein_coding Homo_sapiens 0 721
ENST00000374520 RPL12P1-001 processed_pseudogene Homo_sapiens 0 560
ENST00000406185 RP11-480N24.3-001 processed_pseudogene Homo_sapiens 1e-37 158
ENST00000424565 RPL12P2-001 processed_pseudogene Homo_sapiens 0 525
ENST00000424633 RPL12L3-001 processed_pseudogene Homo_sapiens 0 577
ENST00000425565 RPL12P29-001 processed_pseudogene Homo_sapiens 0 320
ENST00000428087 RP11-248I9.2-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000431782 RP11-169K16.6-001 processed_pseudogene Homo_sapiens 0 494
ENST00000432393 AC093698.2-001 processed_pseudogene Homo_sapiens 0 510
ENST00000432629 RPL12P4-001 processed_pseudogene Homo_sapiens 0 608
ENST00000439896 RPL12P1-001 processed_pseudogene Homo_sapiens 0 555
ENST00000448702 RPL12P1-001 processed_pseudogene Homo_sapiens 0 560
ENST00000460355 NBEAL1-003 retained_intron Homo_sapiens 0 710
ENST00000467671 KIFC1-003 processed_transcript Homo_sapiens 0 462
ENST00000471280 RPL12P38-001 transcribed_processed_pseudogene Homo_sapiens 0 547
ENST00000472214 CTB-46B19.1-001 processed_pseudogene Homo_sapiens 0 433
ENST00000477007 RP11-106M3.1-001 processed_pseudogene Homo_sapiens 0 553
ENST00000481802 CTC-250I14.1-001 processed_pseudogene Homo_sapiens 0 510
ENST00000482081 RPL12P8-001 processed_pseudogene Homo_sapiens 0 628
ENST00000484010 RP11-428G5.2-001 processed_pseudogene Homo_sapiens 0 486
ENST00000485633 RPL12P33-001 processed_pseudogene Homo_sapiens 0 510
ENST00000486695 KIFC1-003 retained_intron Homo_sapiens 0 462
ENST00000486874 RPL12P37-001 processed_pseudogene Homo_sapiens 0 475
ENST00000492999 KIFC1-003 processed_transcript Homo_sapiens 0 457
ENST00000495231 RP11-434O22.1-001 processed_pseudogene Homo_sapiens 0 544
ENST00000497322 RPL12-002 processed_transcript Homo_sapiens 1e-39 169
ENST00000497825 RPL12-003 processed_transcript Homo_sapiens 5e-40 169
ENST00000536368 RPL12-201 protein_coding Homo_sapiens 0 237
ENST00000588627 RPL12P38-002 processed_transcript Homo_sapiens 0 652
ENST00000603116 RP4-741O10.1-001 processed_pseudogene Homo_sapiens 4e-32 139

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