C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 4b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000016916 gria4b-001 ENSDARG00000059368 7955 + 21:20858542-21034381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000016916
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000016916 21.245±0.00 0.808±0.00 0.074±0.00 0.090±0.00 1.242±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005215 IEA transporter activity
GO:0005216 IEA ion channel activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0030054 IEA cell junction
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027020 Gria4-201 protein_coding Mus_musculus 0 1663
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 793
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 0 641
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 699
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 0 725
ENSMUST00000126843 Gria3-008 retained_intron Mus_musculus 0 215
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 675
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 0 527
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 0 725
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 721
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 5e-35 154
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 1640
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 226
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 1640
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 237

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