C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA2 (alpha 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075316 Gria2-201 ENSMUSG00000033981 10090 - 3:80684936-80802791 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075316 0.046±0.04 0.473±0.25 0.004±0.00 12.532±4.35 0.022±0.01 0.025±0.01 0.004±0.00 0.025±0.00 0.016±0.01 0.035±0.01 0.002±0.00 0.059±0.03 0.008±0.01 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007F1 CIL_0007F1_0002 CGP 3:80684936-80913660

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IDA ionotropic glutamate receptor activity
GO:0004971 IBA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IDA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007268 IDA synaptic transmission
GO:0008021 IDA synaptic vesicle
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045202 IDA synapse
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 1762
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 1631
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 0 1424
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 887
ENSDART00000016916 gria4b-001 protein_coding Danio_rerio 0 793
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 0 652
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 640
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 322
ENSDART00000123713 gria1b-003 protein_coding Danio_rerio 0 298
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 5084
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 773
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 5110
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 0 3188
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 1271
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 4588
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 3025
ENST00000503437 GRIA2-014 protein_coding Homo_sapiens 0 645
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 470
ENST00000504801 GRIA2-007 processed_transcript Homo_sapiens 0 202
ENST00000505888 GRIA2-011 protein_coding Homo_sapiens 0 702
ENST00000506284 GRIA2-010 protein_coding Homo_sapiens 0 337
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 4076
ENST00000509417 GRIA2-009 protein_coding Homo_sapiens 0 713
ENST00000510854 GRIA2-012 protein_coding Homo_sapiens 0 878
ENST00000512774 GRIA2-008 protein_coding Homo_sapiens 0 396
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 773
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 773
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 773
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 1271
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 442
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 950
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 811
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 830
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 950

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