C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA3 (alpha 3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076349 Gria3-001 ENSMUSG00000001986 10090 + X:41401304-41678601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076349
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076349 0.626±0.02 2.004±0.31 1.624±0.32 7.214±1.22 0.810±0.25 0.534±0.23 0.158±0.02 0.927±0.38 0.629±0.13 1.742±0.42 0.164±0.11 0.905±0.28 0.310±0.18 0.174±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0002 CGP X:41400854-41920674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004971 IBA:ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032281 IDA:ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 1655
ENSDART00000049291 gria3a-001 protein_coding Danio_rerio 0 1363
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 872
ENSDART00000016916 gria4b-001 protein_coding Danio_rerio 0 641
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 398
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 294
ENSDART00000137120 gria3a-002 protein_coding Danio_rerio 0 276
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 1016
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 1029
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 1.4013e-45 189
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 961
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 1029
ENST00000460123 GRIA3-003 processed_transcript Homo_sapiens 0 821
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 1026
ENST00000479118 GRIA3-004 processed_transcript Homo_sapiens 0 758
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 1029
ENST00000510854 GRIA2-012 protein_coding Homo_sapiens 0 486
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 961
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 1016
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 4152
ENST00000611689 GRIA3-006 protein_coding Homo_sapiens 0 712
ENST00000616590 GRIA3-007 protein_coding Homo_sapiens 0 473
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 6835
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 3906
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 6837

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