C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323661 GRIA2-006 ENSG00000120251 9606 + 4:157221242-157362821 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000323661
Transcript ID Breast
ENST00000323661 0.051±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DX CIL_0006DX_0002 CGP 4:157076057-157366075
CIL_00007X CIL_00007X_0002 CGP 4:157204182-158173318

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 3188
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 3188
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 1264
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 1264
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 357
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 217
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 211
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 8.00141e-43 180
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 4.00001e-41 174
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 4.00001e-41 174
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 4.00001e-41 174
ENSMUST00000027020 Gria4-201 protein_coding Mus_musculus 4.00001e-41 174
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 4.00001e-41 174
ENSMUST00000151045 Gria1-006 protein_coding Mus_musculus 5e-40 171
ENSMUST00000036315 Gria1-004 protein_coding Mus_musculus 5e-40 171
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 3e-37 161
ENSDART00000016916 gria4b-001 protein_coding Danio_rerio 5e-35 154
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 3e-32 145
ENSDART00000123713 gria1b-003 protein_coding Danio_rerio 5e-30 137
ENSMUST00000094179 Gria1-005 protein_coding Mus_musculus 2e-29 135
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 4e-26 124

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