C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA2 (alpha 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107745 Gria2-202 ENSMUSG00000033981 10090 - 3:80684936-80802791 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107745
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107745 0.056±0.06 0.763±0.33 0.004±0.00 15.578±9.30 0.023±0.01 0.054±0.06 0.004±0.00 0.033±0.03 0.009±0.01 0.035±0.01 0.002±0.00 0.142±0.14 0.007±0.00 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007F1 CIL_0007F1_0002 CGP 3:80684936-80913660

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IDA ionotropic glutamate receptor activity
GO:0004971 IBA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IDA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007268 IDA synaptic transmission
GO:0008021 IDA synaptic vesicle
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045202 IDA synapse
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 1917
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 1448
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 0 1341
ENSDART00000016916 gria4b-001 protein_coding Danio_rerio 0 699
ENSDART00000123713 gria1b-003 protein_coding Danio_rerio 0 625
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 510
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 473
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 0 298
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 4902
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 1114
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 5288
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 0 3188
ENST00000340592 GRIA1-005 protein_coding Homo_sapiens 0 773
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 4765
ENST00000448073 GRIA1-014 protein_coding Homo_sapiens 0 773
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 3203
ENST00000503437 GRIA2-014 protein_coding Homo_sapiens 0 645
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 291
ENST00000504801 GRIA2-007 processed_transcript Homo_sapiens 0 202
ENST00000505888 GRIA2-011 protein_coding Homo_sapiens 0 702
ENST00000506284 GRIA2-010 protein_coding Homo_sapiens 0 337
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 4253
ENST00000509417 GRIA2-009 protein_coding Homo_sapiens 0 713
ENST00000510854 GRIA2-012 protein_coding Homo_sapiens 0 1055
ENST00000512774 GRIA2-008 protein_coding Homo_sapiens 0 396
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 1114
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 822
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 939
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 728
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 822

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