C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA4 (alpha 4)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027020 Gria4-201 ENSMUSG00000025892 10090 - 9:4417899-4796234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027020
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027020 1.100±1.09 0.137±0.05 4.615±2.36 0.214±0.22 0.340±0.08 0.018±0.01 0.280±0.13 0.020±0.01 0.041±0.04 0.003±0.00 0.101±0.06 0.008±0.00 0.194±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YT CIL_0000YT_0002 CGP 9:4383535-4796234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004971 IBA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0031982 IEA vesicle
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045202 IDA synapse
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016916 gria4b-001 protein_coding Danio_rerio 0 1663
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 998
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 941
ENSDART00000049291 gria3a-001 protein_coding Danio_rerio 0 797
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 0 773
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 0 573
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 549
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 1064
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 4414
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 793
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 4.00001e-41 174
ENST00000393125 GRIA4-001 protein_coding Homo_sapiens 0 1779
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 3723
ENST00000428631 GRIA4-004 protein_coding Homo_sapiens 0 1762
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 313
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 793
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 793
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 793
ENST00000525032 GRIA4-002 retained_intron Homo_sapiens 0 985
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 3602
ENST00000525921 GRIA4-011 protein_coding Homo_sapiens 0 431
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000527177 GRIA4-009 protein_coding Homo_sapiens 0 468
ENST00000527669 GRIA4-003 protein_coding Homo_sapiens 0 481
ENST00000527687 GRIA4-012 processed_transcript Homo_sapiens 0 725
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 4292
ENST00000531011 GRIA4-013 protein_coding Homo_sapiens 0 741
ENST00000531986 GRIA4-010 protein_coding Homo_sapiens 0 431
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 505
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 1109
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 1003
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 1109

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