C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA3 (alpha 3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165288 Gria3-201 ENSMUSG00000001986 10090 + X:41401565-41672464 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLiverOvaryPlacentaTestisENSMUST00000165288
Transcript ID Adipose Brain Liver Ovary Placenta Testis
ENSMUST00000165288 0.573±0.00 26.434±0.00 0.183±0.00 2.050±0.00 0.097±0.00 0.104±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0002 CGP X:41400854-41920674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004971 IBA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 1805
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 859
ENSDART00000016916 gria4b-001 protein_coding Danio_rerio 0 725
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 0 676
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 0 569
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 568
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 1037
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 917
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 797
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 4.00001e-41 174
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 1079
ENST00000460123 GRIA3-003 processed_transcript Homo_sapiens 0 431
ENST00000479118 GRIA3-004 processed_transcript Homo_sapiens 0 758
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 283
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 797
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 797
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 797
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 1079
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 917
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 318
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 4200
ENST00000611689 GRIA3-006 protein_coding Homo_sapiens 0 414
ENST00000616590 GRIA3-007 protein_coding Homo_sapiens 0 414
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 4034
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 3773
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 4200

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