C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glyceraldehyde-3-phosphate dehydrogenase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000063800 gapdh-001 ENSDARG00000043457 7955 - 16:19254364-19259325 protein_coding

Danio rerio EnsemblZv9

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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000063800
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000063800 19.631±19.92 9412.543±8879.72 781.347±712.13 907.397±0.00 9841.980±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0004365 IEA glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0005856 IEA cytoskeleton
GO:0006006 IEA glucose metabolic process
GO:0006096 IEA glycolysis
GO:0006915 IEA apoptotic process
GO:0008017 ISS microtubule binding
GO:0015630 ISS microtubule cytoskeleton
GO:0016491 IEA oxidoreductase activity
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016740 IEA transferase activity
GO:0035605 ISS peptidyl-cysteine S-nitrosylase activity
GO:0035606 ISS peptidyl-cysteine S-trans-nitrosylation
GO:0050661 IEA NADP binding
GO:0050821 ISS protein stabilization
GO:0051287 IEA NAD binding
GO:0051402 ISS neuron apoptotic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074758 Gapdhs-003 protein_coding Mus_musculus 0 250
ENSMUST00000086739 Gm10566-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000118655 Gm12182-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000121923 Gm4908-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000122085 Gm15593-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000180415 Gm5523-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000182067 Gapdhs-002 nonsense_mediated_decay Mus_musculus 1e-35 154
ENSMUST00000182565 Gm8825-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000182634 Gapdhs-001 protein_coding Mus_musculus 0 250
ENSMUST00000182754 Gm8330-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000182832 Gm7734-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000182995 Gm5335-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000183020 Gm5710-001 processed_pseudogene Mus_musculus 0 486
ENST00000222286 GAPDHS-001 protein_coding Homo_sapiens 8.99999e-40 169

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