C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8825
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182565 Gm8825-001 ENSMUSG00000098105 10090 - 19:25795810-25796807 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182565 0.094±0.08 0.086±0.02 0.114±0.00 0.021±0.01 0.303±0.35 0.077±0.02 0.059±0.02 0.138±0.14 0.055±0.03 0.034±0.00 0.107±0.07 0.134±0.00 0.048±0.01 0.092±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UR CIL_0008UR_0002 VISTA 19:25304027-25904976
CIL_0008NH CIL_0008NH_0002 VISTA 19:25307278-25909178
CIL_0007KZ CIL_0007KZ_0002 UCNEbase 19:25568311-25924074
CIL_000643 CIL_000643_0003 CGP 19:25672420-26778321

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000063800 gapdh-001 protein_coding Danio_rerio 0 566
ENSDART00000139939 gapdh-004 protein_coding Danio_rerio 0 405
ENSDART00000147739 gapdh-002 protein_coding Danio_rerio 0 366
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 364
ENSDART00000148397 gapdh-005 retained_intron Danio_rerio 0 246
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1118
ENST00000328713 GAPDHP24-001 processed_pseudogene Homo_sapiens 0 556
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 896
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1098
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1118
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1118
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 510
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 870
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 806
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 904
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 780
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 2.00386e-43 180
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 584
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 785
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 767
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 976
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 610
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 804
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 743
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 597
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 9e-29 128
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 481
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1026
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 712
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 601
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 896
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 896
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 571
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 773
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 789
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 828
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 636
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 791
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 846
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 893
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 527
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 558
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1000

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