C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 8 pseudogene 34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577607 KRT8P34-001 ENSG00000264663 9606 - 17:39835037-39836080 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLiverLungOvaryPlacentaTestisENST00000577607
Transcript ID Adrenal Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000577607 0.397±0.00 0.112±0.00 0.071±0.00 0.025±0.00 0.047±0.00 0.221±0.18 0.169±0.00 0.045±0.00 0.108±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_0002PT CIL_0002PT_0001 CGP 17:39737927-39864188
CIL_0002PS CIL_0002PS_0001 CGP 17:39757721-39877896
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0 824
ENSMUST00000023714 4732456N10Rik-001 protein_coding Mus_musculus 0 202
ENSDART00000065351 krt4-201 protein_coding Danio_rerio 1e-37 161
ENSDART00000012644 krt4-001 protein_coding Danio_rerio 1e-37 161
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 8e-19 99
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 5e-16 90
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 5e-16 90
ENSDART00000121861 prph-201 protein_coding Danio_rerio 0.00000000000002 84
ENSDART00000154314 prph-001 protein_coding Danio_rerio 0.00000000000002 84
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 0.000000002 68
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0.000000002 68
ENSMUST00000147662 Krt7-003 protein_coding Mus_musculus 0.000000002 68

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