C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glyceraldehyde-3-phosphate dehydrogenase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000139939 gapdh-004 ENSDARG00000043457 7955 - 16:19255377-19259246 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

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Numeric Values
Transcript'; BrainENSDART00000139939
Transcript ID Brain
ENSDART00000139939 18.353±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074758 Gapdhs-003 protein_coding Mus_musculus 0 217
ENSMUST00000086739 Gm10566-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000118655 Gm12182-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000121923 Gm4908-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000122085 Gm15593-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000180415 Gm5523-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000182067 Gapdhs-002 nonsense_mediated_decay Mus_musculus 1e-25 121
ENSMUST00000182565 Gm8825-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000182634 Gapdhs-001 protein_coding Mus_musculus 0 217
ENSMUST00000182754 Gm8330-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000182832 Gm7734-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000182995 Gm5335-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000183020 Gm5710-001 processed_pseudogene Mus_musculus 0 359
ENST00000222286 GAPDHS-001 protein_coding Homo_sapiens 2e-36 158

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