C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4B, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027502 Atg4b-001 ENSMUSG00000026280 10090 + 1:93754905-93790610 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027502
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027502 5.623±0.45 6.860±1.54 14.957±3.39 12.981±5.98 3.649±0.78 7.743±1.55 2.664±0.30 5.479±0.90 7.962±4.13 5.199±0.52 3.211±0.39 5.394±1.96 7.334±5.70 3.690±2.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U9 CIL_0004U9_0003 CGP 1:93685660-93754864
CIL_0003ST CIL_0003ST_0002 CGP 1:93701935-93790610
CIL_0004UA CIL_0004UA_0003 CGP 1:93751500-93801934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0004175 IEA endopeptidase activity
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 ISS autophagy
GO:0008233 IDA peptidase activity
GO:0008234 ISO cysteine-type peptidase activity
GO:0010508 IEA positive regulation of autophagy
GO:0015031 IEA protein transport
GO:0045732 IEA positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344376 ATG4B-005 nonsense_mediated_decay Homo_sapiens 0 1155
ENST00000400772 ATG4B-011 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000402096 ATG4B-006 protein_coding Homo_sapiens 0 1375
ENST00000404914 ATG4B-002 protein_coding Homo_sapiens 0 1480
ENST00000405546 ATG4B-001 protein_coding Homo_sapiens 0 1393
ENST00000419606 ATG4B-015 protein_coding Homo_sapiens 0 529
ENST00000425239 ATG4B-023 protein_coding Homo_sapiens 0 708
ENST00000428861 ATG4B-027 protein_coding Homo_sapiens 0 555
ENST00000429899 ATG4B-026 protein_coding Homo_sapiens 0 542
ENST00000430617 ATG4B-020 protein_coding Homo_sapiens 0 446
ENST00000460211 ATG4B-028 retained_intron Homo_sapiens 0 444
ENST00000465399 ATG4B-016 retained_intron Homo_sapiens 0 628
ENST00000468018 ATG4B-021 retained_intron Homo_sapiens 0 549
ENST00000475693 ATG4B-008 retained_intron Homo_sapiens 0 446
ENST00000482507 ATG4B-004 retained_intron Homo_sapiens 0 1050
ENST00000493618 ATG4B-024 retained_intron Homo_sapiens 0 448
ENST00000494132 ATG4B-029 retained_intron Homo_sapiens 0 193
ENST00000494465 ATG4B-003 retained_intron Homo_sapiens 0 606

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