C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L10a pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472730 RPL10AP6-001 ENSG00000226360 9606 - 3:61742455-61743106 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000472730
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000472730 0.375±0.00 0.313±0.00 0.055±0.01 0.480±0.02 0.297±0.00 0.140±0.07 0.145±0.00 0.435±0.31 0.174±0.13 0.374±0.00 0.591±0.47 0.360±0.28 0.469±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QX CIL_0008QX_0001 VISTA 3:61508217-62112191
CIL_00034G CIL_00034G_0001 CGP 3:61561569-62336213

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120360 Rpl10a-ps1-001 processed_pseudogene Mus_musculus 0 756
ENSMUST00000042334 Rpl10a-001 protein_coding Mus_musculus 0 756
ENSMUST00000116410 Gm13573-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000071184 Rpl10a-ps2-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000129935 Rpl10a-002 nonsense_mediated_decay Mus_musculus 0 536
ENSMUST00000150103 Rpl10a-005 retained_intron Mus_musculus 0 368
ENSMUST00000152665 Rpl10a-003 retained_intron Mus_musculus 0 235
ENSMUST00000128758 Rpl10a-006 retained_intron Mus_musculus 0 224
ENSMUST00000143443 Rpl10a-004 retained_intron Mus_musculus 0 219
ENSMUST00000141049 Rpl10a-007 retained_intron Mus_musculus 1e-35 154

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