C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051163 Pcdhb8-201 ENSMUSG00000045876 10090 + 18:37355271-37357610 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051163 0.949±0.63 0.731±0.11 0.148±0.02 0.551±0.14 0.739±0.19 0.211±0.07 0.233±0.03 0.231±0.08 0.037±0.03 1.312±0.11 0.023±0.00 1.630±0.90 0.033±0.03 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000K CGP 18:37341702-37357610
CIL_00062S CIL_00062S_000O CGP 18:37355271-37403909

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231130 PCDHB3-001 protein_coding Homo_sapiens 0 896
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 1794
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 856
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 835
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 819
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1027
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 1027
ENST00000623671 PCDHB15-002 protein_coding Homo_sapiens 1e-20 104

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