C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 17 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539533 PCDHB17-001 ENSG00000255622 9606 + 5:141155996-141158388 transcribed_unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartOvaryENST00000539533
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Ovary
ENST00000539533 0.037±0.00 0.110±0.00 0.027±0.00 0.215±0.06 0.144±0.00 0.097±0.00 0.050±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0007 CGP 5:141150022-141176383

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 1799
ENSMUST00000051163 Pcdhb8-201 protein_coding Mus_musculus 0 1027
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 1020
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 990
ENSMUST00000051126 Pcdhb10-201 protein_coding Mus_musculus 0 924
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 887
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 870
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 857
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 846
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 760

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