C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 17 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000623466 PCDHB17-002 ENSG00000255622 9606 + 5:141155996-141159061 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000623466
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000623466 0.013±0.00 0.063±0.00 0.167±0.00 0.035±0.00 0.028±0.00 0.039±0.00 0.036±0.00 0.117±0.06 0.055±0.04 0.016±0.00 0.435±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0007 CGP 5:141150022-141176383

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 1799
ENSMUST00000051163 Pcdhb8-201 protein_coding Mus_musculus 0 1027
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 1020
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 990
ENSMUST00000051126 Pcdhb10-201 protein_coding Mus_musculus 0 924
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 887
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 870
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 857
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 846
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 760

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