C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, L type, alpha 1C subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078320 Cacna1c-004 ENSMUSG00000051331 10090 - 6:118592464-119108189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000078320
Transcript ID Adipose Brain Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000078320 1.145±0.87 1.507±0.19 0.557±0.04 5.512±0.31 0.080±0.02 1.599±0.19 0.076±0.00 1.257±0.30 0.061±0.04 0.176±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002095 IDA caveolar macromolecular signaling complex
GO:0005245 TAS voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005891 TAS voltage-gated calcium channel complex
GO:0006816 IMP calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006939 IMP smooth muscle contraction
GO:0007268 IMP synaptic transmission
GO:0007628 IGI adult walking behavior
GO:0008217 IMP regulation of blood pressure
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0008542 IMP visual learning
GO:0016020 IDA membrane
GO:0017156 IMP calcium ion-dependent exocytosis
GO:0019229 IMP regulation of vasoconstriction
GO:0019899 IPI enzyme binding
GO:0030018 IDA Z disc
GO:0030073 IMP insulin secretion
GO:0030252 IDA growth hormone secretion
GO:0030315 TAS T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042593 IMP glucose homeostasis
GO:0043025 IDA neuronal cell body
GO:0043198 IDA dendritic shaft
GO:0046620 IMP regulation of organ growth
GO:0046872 IEA metal ion binding
GO:0060083 IMP smooth muscle contraction involved in micturition
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132909 cacna1c-001 protein_coding Danio_rerio 0 2287
ENSDART00000028856 cacna1c-201 protein_coding Danio_rerio 0 2183
ENSDART00000100118 cacna1da-202 protein_coding Danio_rerio 0 641
ENSDART00000089956 cacna1da-201 protein_coding Danio_rerio 0 586
ENSDART00000058276 cacna1da-001 protein_coding Danio_rerio 0 586
ENSDART00000065375 cacna1db-201 protein_coding Danio_rerio 0 387
ENSDART00000011078 CACNA1F (1 of 2)-201 protein_coding Danio_rerio 0 339
ENSDART00000041564 cacna1f-201 protein_coding Danio_rerio 0 315
ENSDART00000134151 cacna1f-001 protein_coding Danio_rerio 0 315
ENST00000288139 CACNA1D-001 protein_coding Homo_sapiens 0 1144
ENST00000323022 CACNA1F-001 protein_coding Homo_sapiens 0 1245
ENST00000327702 CACNA1C-023 protein_coding Homo_sapiens 0 6998
ENST00000335762 CACNA1C-015 protein_coding Homo_sapiens 0 6388
ENST00000344100 CACNA1C-021 protein_coding Homo_sapiens 0 4948
ENST00000347598 CACNA1C-017 protein_coding Homo_sapiens 0 3522
ENST00000350061 CACNA1D-003 protein_coding Homo_sapiens 0 1144
ENST00000362061 CACNA1S-001 protein_coding Homo_sapiens 0 776
ENST00000367338 CACNA1S-002 protein_coding Homo_sapiens 0 776
ENST00000376251 CACNA1F-002 protein_coding Homo_sapiens 0 1245
ENST00000376265 CACNA1F-007 protein_coding Homo_sapiens 0 1245
ENST00000399591 CACNA1C-008 protein_coding Homo_sapiens 0 5053
ENST00000399595 CACNA1C-002 protein_coding Homo_sapiens 0 4920
ENST00000399597 CACNA1C-005 protein_coding Homo_sapiens 0 8150
ENST00000399601 CACNA1C-020 protein_coding Homo_sapiens 0 8111
ENST00000399603 CACNA1C-011 protein_coding Homo_sapiens 0 8357
ENST00000399606 CACNA1C-019 protein_coding Homo_sapiens 0 4593
ENST00000399617 CACNA1C-013 protein_coding Homo_sapiens 0 7197
ENST00000399621 CACNA1C-006 protein_coding Homo_sapiens 0 6047
ENST00000399629 CACNA1C-022 protein_coding Homo_sapiens 0 5193
ENST00000399634 CACNA1C-012 protein_coding Homo_sapiens 0 7027
ENST00000399637 CACNA1C-007 protein_coding Homo_sapiens 0 6180
ENST00000399638 CACNA1C-004 protein_coding Homo_sapiens 0 5060
ENST00000399641 CACNA1C-010 protein_coding Homo_sapiens 0 8272
ENST00000399644 CACNA1C-003 protein_coding Homo_sapiens 0 8283
ENST00000399649 CACNA1C-024 protein_coding Homo_sapiens 0 4920
ENST00000399655 CACNA1C-001 protein_coding Homo_sapiens 0 8174
ENST00000402845 CACNA1C-032 protein_coding Homo_sapiens 0 6218
ENST00000406454 CACNA1C-031 protein_coding Homo_sapiens 0 7199
ENST00000422281 CACNA1D-002 protein_coding Homo_sapiens 0 939
ENST00000465278 CACNA1C-016 protein_coding Homo_sapiens 0 833
ENST00000465934 CACNA1C-025 retained_intron Homo_sapiens 0 667
ENST00000480911 CACNA1C-018 protein_coding Homo_sapiens 0 5062
ENST00000481478 CACNA1D-004 protein_coding Homo_sapiens 0 1105
ENST00000483136 CACNA1C-027 processed_transcript Homo_sapiens 0 213
ENST00000491104 CACNA1C-014 processed_transcript Homo_sapiens 0 525
ENST00000492150 CACNA1C-029 retained_intron Homo_sapiens 0 337
ENST00000496818 CACNA1C-026 protein_coding Homo_sapiens 0 562
ENST00000613940 CACNA1C-201 protein_coding Homo_sapiens 0 6593
ENST00000615303 CACNA1C-202 protein_coding Homo_sapiens 0 2918
ENST00000615400 CACNA1C-203 protein_coding Homo_sapiens 0 3138
ENST00000616390 CACNA1C-036 protein_coding Homo_sapiens 0 2992
ENST00000620878 CACNA1C-204 protein_coding Homo_sapiens 0 4477
ENST00000621625 CACNA1C-205 protein_coding Homo_sapiens 0 6394

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